| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_4490 |
|---|
| Symbol | |
|---|
| ID | 5155126 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 4702761 |
|---|
| End bp | 4703390 |
|---|
| Gene Length | 630 bp |
|---|
| Protein Length | 209 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640559293 |
|---|
| Product | putative haloacid dehalogenase-like hydrolase |
|---|
| Protein accession | YP_001240430 |
|---|
| Protein GI | 148255845 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCTCCT CCGATCTTCG CCCCGGCGCG GTCGACGCGC TGCTGTTCGA TCTCGGCCGG
GTCGTGATCG ACATCGATTT CGTGCAGGTC GTGTCGCGCT GGGCCAGCCA TGCTGGCCGC
GCGCCGGAGG ATCTCGCCGC GCGCTTTGTG CGCGACGAGA TCTATCACGG GCATGAGCGC
GGCACCGTCT CCGATGCTGC CTTCTTCGCC AATCTGCGCC GGCAGCTCGG CATCGACATC
ACCGACGATC AATTTCTCGA GGGCTGGAAC GCGATCTTTG TCGGCCCGAT GCCCGGCATC
GCCCCCCTGC TCGTCCGCGC GGCGGACAGA CTGCCGCTCT ACGCCTTCTC CAACACCAAC
CAGCCGCATA TCGAGCACTT CTCATCGCGC TACGCCGATC TGCTCGGTCA TTTCCGCGAG
ATCTTTCTGT CGTCGTCGAT CGGCCTGCGC AAGCCGGACG CCGCGGCCTA TCAGCACGTG
GTGCAGGCGA TTGGAATCCG GGCCGAGCGC ATCCTGTTCT TCGACGATCT CGCTGAGAAC
ATCGAGGGCG CCCGTGCCAG CGGGCTGCAG GCGGTGCTGG TGCGCTCGAC GGAGGACATC
GCCGCGGCCC TGCAGGCGTT GGGGATCTGA
|
|---|
| Protein sequence | MLSSDLRPGA VDALLFDLGR VVIDIDFVQV VSRWASHAGR APEDLAARFV RDEIYHGHER
GTVSDAAFFA NLRRQLGIDI TDDQFLEGWN AIFVGPMPGI APLLVRAADR LPLYAFSNTN
QPHIEHFSSR YADLLGHFRE IFLSSSIGLR KPDAAAYQHV VQAIGIRAER ILFFDDLAEN
IEGARASGLQ AVLVRSTEDI AAALQALGI
|
|---|
| |