| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_4485 |
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| Symbol | |
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| ID | 5155123 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | + |
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| Start bp | 4696818 |
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| End bp | 4699541 |
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| Gene Length | 2724 bp |
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| Protein Length | 907 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640559290 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001240427 |
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| Protein GI | 148255842 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.253902 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGACAA ACGCCAGTTC GGGGAGTTCC ATCAGAGCCA CGGCCGATCA CGGGGGGCCG
ATCCGCTGGC TCATCGGTGG TGGTCTGACA CTGATCGCAG CCATTGCGAT CGGCGCCACC
ATCATGGCCG ACAGCTTTCG GGAACGTGCG CTGAACAGCG CAACGCGCGA ATTGGAGAAC
ACCGTCCTGC TGCTGGCGCG CCATTTCGAC CAGCAGATGG AAGATCTCGG CGCGATCCAG
CGCGACCTCG CCGATTACGT CCGGCAGAGG CACATCGACA CGGCCGCCCG CTTCAGAGAG
CAGATGGGGA GCGCGCCCGT CAACGCCATG CTGCAAAGCA AGCTGAGCGC GGTGTCCTAT
GTCGGCGGCG TCAGCATCTT CGATTCCGAA GGCAACCTGA TCAATTCCGC AACGTCATGG
CCGGTGCCGG CGATCAATGT CGCCGATCGC GGTTATTTCC AGCGGCTGAA GTTCGATCCC
GCATCGCCGC AACTGCTGAT CGAACCGGTC GTGAGCCGGG TCACTGGCAC GCATGTCGCC
GTCATCGCGC TGAAGCTGAC CGCGCCCAAC GGCGAGTTCC TCGGCGTCAT CGCCCGCAGT
CTCGAGCCCG TCAATGTCGA GCGCTTCTTC GCGTCCGTCG CCCTCGGGCC TGAAGCCGCG
ATCTCGATGA TGCATCGCGA TGGGACATTG CTGGCGCGGC ACCCCCGCCA CGAGGGGATG
CTGAACCAGA ACTACAAAGA TGCGCCGATC TTCCGGCAGA TCCTGGCCGG CGACGGCAAT
ACGACCGGCA TCTTCAGCAG CCCCGTCGAC CGCGAACACA GGATCGGCGC ATCGCATCGC
CTGACGAGCT ATCCGCTGAT CGTGACCGCG ACGACGACGG TCTCGGCGGC GCTCGCCGAT
TGGCGCGAGC AGATGCGTTT CCTGATCGGC GTGGGCGTCA CGTCGGTGCT GCTGATCGCC
GGGATGCTCT ATGTGGTGGT GCGCCGACTG ATCAGCGACC ACGAAGCATC GAACCAGCGA
TTGACGCTGG AGAAGGAACG GCTCGACAAG GCGGTCAACA ACATGACCCA GGGTCTTCTG
ATGTTCGACG CATCGGAGCG CCTCGTCATC AGCAATCAGC GCTACATCGA GATGTACGGC
CTCTCCGCCG ACGTCGTGAA GCCCGGCTGC ACGTTCCGCG AGCTGATCGC GCACCGCAAG
GCCACCGGCT CCTTCATTGG CGACGAGGCC GAATATGTCG CAACTATTCT GCGCGACATC
GGGCGCAAGA AGTCCCATTT GATCGAGACG CCGGACGGCC GCTCCATCGA GATCGTCAAC
GAACCGCTCG CCGACGGCGG CTGGCTCGCC ACCCATGAGG ACATCACCGA GCGCCGCAAG
GCCGAGCAGC GGATCACCCA TCTTGCGCAT TATGATGCGC TGACGGAGCT GCCAAACCGG
ACCCTTTTCC ACGAGAGGCT GAAGCAGGAG CTGATCCACG TCTCCGCGGG ACAGCGGCTC
GCGCTGCATT ACATCGACAT CGACGAGTTC AAGGGCGTCA ACGATTCACT CGGCCACCTG
ATCGGCGACG AGCTCCTGAA GTCGGTCGCC GCCAGCCTGA GCACCTGCGT CGGCGAGGCC
GGCTTCGTCG CCCGGCTCGG CGGCGACGAA TTCGCGGTCG TCCAGACGGG GATCCGCAAC
CGCGGCGATG TCGAGCAACT GATCGAGGAC ATTCTCGCCG CGATCCGCGC GCCGCGCGAT
TGTCTCGGCC ATCAACTCAC GGCCGACGCC TCGATCGGCG TCGCGCTGAT CCCGGAACAC
GGCACCGAGC TCGACCAGAT CATGAAGAAC GCCGATCTGG CGATGTACGC CGCCAAGGGC
GCGGGCCGCC GCACCTGGCG CTTCTTCGAG CCGGAGATGG ATGCGCAGGT CAAGGCCCGC
CATCAGCTCG AGGTCGACCT GCGCCAGGCG ATGGTCGACG ATCAGCTCGA AGTCTACTAT
CAGCCCTGCG TGAGCCTGCA GGATGACCGT ATCGTCGGCT GCGAGGCGCT GGTGCGCTGG
AAACATCCGG TGCGCGGCAA CGTCTCGCCC GCCGAGTTCA TTCCGATTGC CGAGGACACC
GGACTCATCA ACCAGCTCGG CGAACGCGTT CTCCACCTCG CCTGCGCCGA GGCCGCGACC
TGGCCGGACG ACATCCGGCT CGCCGTCAAC GTTTCGCCGG TGCAGTTCAA GAGCGGAACC
CTGGCGCTCA AGGTCGCCCA TGCACTGGCA ACGTCGGGCC TGTCACCACA CCGGCTGGAG
CTCGAAATCA CCGAGGCCGT GCTGATCCGC GACGATGATG CGCTCGACAC CCTGCACCAG
CTGCGCGCGC TCGGCGTGCG CATTGCGCTC GACGATTTCG GCACCGGCTA TTCCAGCCTG
AGCTATCTGC AGCGGATCCC GTTCGACAAG ATCAAGATCG ACCGCTGCTT CGTCAAGGAT
ATCACCGAGT CCGAAGGCTC GGCGAGCATC GTCCAGGCCG TGGTCAACAT CGCCGCGATC
CGCAAGATGT CGACAACAGC GGAAGGCGTC GAGACCGAGG CGCAGCGTCA GGTGCTGAAG
CGGCTCGGCT GCTCGGAGAT GCAGGGCTAT CTGTTCAGCC CGCCGAAGCC CGCGGCCGAC
GTACGGAGCC TATTCAAGGC GCAGCGTCCC CCTAGCCGCG CCGATAGCAC CAAGCGCCGG
CGGCCGCGTT CCGATGCCGC GTGA
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| Protein sequence | MTTNASSGSS IRATADHGGP IRWLIGGGLT LIAAIAIGAT IMADSFRERA LNSATRELEN
TVLLLARHFD QQMEDLGAIQ RDLADYVRQR HIDTAARFRE QMGSAPVNAM LQSKLSAVSY
VGGVSIFDSE GNLINSATSW PVPAINVADR GYFQRLKFDP ASPQLLIEPV VSRVTGTHVA
VIALKLTAPN GEFLGVIARS LEPVNVERFF ASVALGPEAA ISMMHRDGTL LARHPRHEGM
LNQNYKDAPI FRQILAGDGN TTGIFSSPVD REHRIGASHR LTSYPLIVTA TTTVSAALAD
WREQMRFLIG VGVTSVLLIA GMLYVVVRRL ISDHEASNQR LTLEKERLDK AVNNMTQGLL
MFDASERLVI SNQRYIEMYG LSADVVKPGC TFRELIAHRK ATGSFIGDEA EYVATILRDI
GRKKSHLIET PDGRSIEIVN EPLADGGWLA THEDITERRK AEQRITHLAH YDALTELPNR
TLFHERLKQE LIHVSAGQRL ALHYIDIDEF KGVNDSLGHL IGDELLKSVA ASLSTCVGEA
GFVARLGGDE FAVVQTGIRN RGDVEQLIED ILAAIRAPRD CLGHQLTADA SIGVALIPEH
GTELDQIMKN ADLAMYAAKG AGRRTWRFFE PEMDAQVKAR HQLEVDLRQA MVDDQLEVYY
QPCVSLQDDR IVGCEALVRW KHPVRGNVSP AEFIPIAEDT GLINQLGERV LHLACAEAAT
WPDDIRLAVN VSPVQFKSGT LALKVAHALA TSGLSPHRLE LEITEAVLIR DDDALDTLHQ
LRALGVRIAL DDFGTGYSSL SYLQRIPFDK IKIDRCFVKD ITESEGSASI VQAVVNIAAI
RKMSTTAEGV ETEAQRQVLK RLGCSEMQGY LFSPPKPAAD VRSLFKAQRP PSRADSTKRR
RPRSDAA
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