Gene BBta_4485 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBBta_4485 
Symbol 
ID5155123 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBradyrhizobium sp. BTAi1 
KingdomBacteria 
Replicon accessionNC_009485 
Strand
Start bp4696818 
End bp4699541 
Gene Length2724 bp 
Protein Length907 aa 
Translation table11 
GC content65% 
IMG OID640559290 
Productdiguanylate cyclase/phosphodiesterase 
Protein accessionYP_001240427 
Protein GI148255842 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.253902 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGACAA ACGCCAGTTC GGGGAGTTCC ATCAGAGCCA CGGCCGATCA CGGGGGGCCG 
ATCCGCTGGC TCATCGGTGG TGGTCTGACA CTGATCGCAG CCATTGCGAT CGGCGCCACC
ATCATGGCCG ACAGCTTTCG GGAACGTGCG CTGAACAGCG CAACGCGCGA ATTGGAGAAC
ACCGTCCTGC TGCTGGCGCG CCATTTCGAC CAGCAGATGG AAGATCTCGG CGCGATCCAG
CGCGACCTCG CCGATTACGT CCGGCAGAGG CACATCGACA CGGCCGCCCG CTTCAGAGAG
CAGATGGGGA GCGCGCCCGT CAACGCCATG CTGCAAAGCA AGCTGAGCGC GGTGTCCTAT
GTCGGCGGCG TCAGCATCTT CGATTCCGAA GGCAACCTGA TCAATTCCGC AACGTCATGG
CCGGTGCCGG CGATCAATGT CGCCGATCGC GGTTATTTCC AGCGGCTGAA GTTCGATCCC
GCATCGCCGC AACTGCTGAT CGAACCGGTC GTGAGCCGGG TCACTGGCAC GCATGTCGCC
GTCATCGCGC TGAAGCTGAC CGCGCCCAAC GGCGAGTTCC TCGGCGTCAT CGCCCGCAGT
CTCGAGCCCG TCAATGTCGA GCGCTTCTTC GCGTCCGTCG CCCTCGGGCC TGAAGCCGCG
ATCTCGATGA TGCATCGCGA TGGGACATTG CTGGCGCGGC ACCCCCGCCA CGAGGGGATG
CTGAACCAGA ACTACAAAGA TGCGCCGATC TTCCGGCAGA TCCTGGCCGG CGACGGCAAT
ACGACCGGCA TCTTCAGCAG CCCCGTCGAC CGCGAACACA GGATCGGCGC ATCGCATCGC
CTGACGAGCT ATCCGCTGAT CGTGACCGCG ACGACGACGG TCTCGGCGGC GCTCGCCGAT
TGGCGCGAGC AGATGCGTTT CCTGATCGGC GTGGGCGTCA CGTCGGTGCT GCTGATCGCC
GGGATGCTCT ATGTGGTGGT GCGCCGACTG ATCAGCGACC ACGAAGCATC GAACCAGCGA
TTGACGCTGG AGAAGGAACG GCTCGACAAG GCGGTCAACA ACATGACCCA GGGTCTTCTG
ATGTTCGACG CATCGGAGCG CCTCGTCATC AGCAATCAGC GCTACATCGA GATGTACGGC
CTCTCCGCCG ACGTCGTGAA GCCCGGCTGC ACGTTCCGCG AGCTGATCGC GCACCGCAAG
GCCACCGGCT CCTTCATTGG CGACGAGGCC GAATATGTCG CAACTATTCT GCGCGACATC
GGGCGCAAGA AGTCCCATTT GATCGAGACG CCGGACGGCC GCTCCATCGA GATCGTCAAC
GAACCGCTCG CCGACGGCGG CTGGCTCGCC ACCCATGAGG ACATCACCGA GCGCCGCAAG
GCCGAGCAGC GGATCACCCA TCTTGCGCAT TATGATGCGC TGACGGAGCT GCCAAACCGG
ACCCTTTTCC ACGAGAGGCT GAAGCAGGAG CTGATCCACG TCTCCGCGGG ACAGCGGCTC
GCGCTGCATT ACATCGACAT CGACGAGTTC AAGGGCGTCA ACGATTCACT CGGCCACCTG
ATCGGCGACG AGCTCCTGAA GTCGGTCGCC GCCAGCCTGA GCACCTGCGT CGGCGAGGCC
GGCTTCGTCG CCCGGCTCGG CGGCGACGAA TTCGCGGTCG TCCAGACGGG GATCCGCAAC
CGCGGCGATG TCGAGCAACT GATCGAGGAC ATTCTCGCCG CGATCCGCGC GCCGCGCGAT
TGTCTCGGCC ATCAACTCAC GGCCGACGCC TCGATCGGCG TCGCGCTGAT CCCGGAACAC
GGCACCGAGC TCGACCAGAT CATGAAGAAC GCCGATCTGG CGATGTACGC CGCCAAGGGC
GCGGGCCGCC GCACCTGGCG CTTCTTCGAG CCGGAGATGG ATGCGCAGGT CAAGGCCCGC
CATCAGCTCG AGGTCGACCT GCGCCAGGCG ATGGTCGACG ATCAGCTCGA AGTCTACTAT
CAGCCCTGCG TGAGCCTGCA GGATGACCGT ATCGTCGGCT GCGAGGCGCT GGTGCGCTGG
AAACATCCGG TGCGCGGCAA CGTCTCGCCC GCCGAGTTCA TTCCGATTGC CGAGGACACC
GGACTCATCA ACCAGCTCGG CGAACGCGTT CTCCACCTCG CCTGCGCCGA GGCCGCGACC
TGGCCGGACG ACATCCGGCT CGCCGTCAAC GTTTCGCCGG TGCAGTTCAA GAGCGGAACC
CTGGCGCTCA AGGTCGCCCA TGCACTGGCA ACGTCGGGCC TGTCACCACA CCGGCTGGAG
CTCGAAATCA CCGAGGCCGT GCTGATCCGC GACGATGATG CGCTCGACAC CCTGCACCAG
CTGCGCGCGC TCGGCGTGCG CATTGCGCTC GACGATTTCG GCACCGGCTA TTCCAGCCTG
AGCTATCTGC AGCGGATCCC GTTCGACAAG ATCAAGATCG ACCGCTGCTT CGTCAAGGAT
ATCACCGAGT CCGAAGGCTC GGCGAGCATC GTCCAGGCCG TGGTCAACAT CGCCGCGATC
CGCAAGATGT CGACAACAGC GGAAGGCGTC GAGACCGAGG CGCAGCGTCA GGTGCTGAAG
CGGCTCGGCT GCTCGGAGAT GCAGGGCTAT CTGTTCAGCC CGCCGAAGCC CGCGGCCGAC
GTACGGAGCC TATTCAAGGC GCAGCGTCCC CCTAGCCGCG CCGATAGCAC CAAGCGCCGG
CGGCCGCGTT CCGATGCCGC GTGA
 
Protein sequence
MTTNASSGSS IRATADHGGP IRWLIGGGLT LIAAIAIGAT IMADSFRERA LNSATRELEN 
TVLLLARHFD QQMEDLGAIQ RDLADYVRQR HIDTAARFRE QMGSAPVNAM LQSKLSAVSY
VGGVSIFDSE GNLINSATSW PVPAINVADR GYFQRLKFDP ASPQLLIEPV VSRVTGTHVA
VIALKLTAPN GEFLGVIARS LEPVNVERFF ASVALGPEAA ISMMHRDGTL LARHPRHEGM
LNQNYKDAPI FRQILAGDGN TTGIFSSPVD REHRIGASHR LTSYPLIVTA TTTVSAALAD
WREQMRFLIG VGVTSVLLIA GMLYVVVRRL ISDHEASNQR LTLEKERLDK AVNNMTQGLL
MFDASERLVI SNQRYIEMYG LSADVVKPGC TFRELIAHRK ATGSFIGDEA EYVATILRDI
GRKKSHLIET PDGRSIEIVN EPLADGGWLA THEDITERRK AEQRITHLAH YDALTELPNR
TLFHERLKQE LIHVSAGQRL ALHYIDIDEF KGVNDSLGHL IGDELLKSVA ASLSTCVGEA
GFVARLGGDE FAVVQTGIRN RGDVEQLIED ILAAIRAPRD CLGHQLTADA SIGVALIPEH
GTELDQIMKN ADLAMYAAKG AGRRTWRFFE PEMDAQVKAR HQLEVDLRQA MVDDQLEVYY
QPCVSLQDDR IVGCEALVRW KHPVRGNVSP AEFIPIAEDT GLINQLGERV LHLACAEAAT
WPDDIRLAVN VSPVQFKSGT LALKVAHALA TSGLSPHRLE LEITEAVLIR DDDALDTLHQ
LRALGVRIAL DDFGTGYSSL SYLQRIPFDK IKIDRCFVKD ITESEGSASI VQAVVNIAAI
RKMSTTAEGV ETEAQRQVLK RLGCSEMQGY LFSPPKPAAD VRSLFKAQRP PSRADSTKRR
RPRSDAA