| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_4406 |
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| Symbol | secD |
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| ID | 5153171 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | - |
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| Start bp | 4618524 |
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| End bp | 4620125 |
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| Gene Length | 1602 bp |
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| Protein Length | 533 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640559214 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_001240351 |
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| Protein GI | 148255766 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.638067 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.207578 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGTATT TCACGCGGTG GAAGGCGCTG GGCATCATTC TCACGGCGCT CGTGGTGTGC
CTGTGCGCGG TGCCCAACTT CTTCCCCGAA GCGACGGTCA AGACCTGGCC GGCCTGGGCG
CAACGCCATA TCGTTCTCGG TCTAGACCTG CAGGGCGGCT CTTATCTGCT GCTCGAAGTC
GACTCCAACT TCGTCAAGAA GGAGCGGCTC GATGCCGTGC GGGACGACGT TCGTCGGACG
CTCCGCGATG CCAAGATCGG CTATACGGGG CTGGTGAGCC GGGGAGACGG CGTCGAGGTC
CGGATCACCA AGGACACGGA CGCTCCGACC GCATTGTCCA AATTGCGTGA GCTCTCCCAG
CCACTCGGCG GCCTGCTGGG CTCCAGCGGC CAACGCAGCC TCGAGGTCAG CGATGCCGGC
GGCGGCCTCA TCCGCCTGAC GATTCCGCAG GCCGCGATCA CCGAACGCAT CCGCCAGACC
ATCGAGCAGT CGATCCAGAT CGTCGAGCGC CGCGTCAACG AACTCGGCAC CGTGGAGCCG
GTCATCCAGC GCCAGGGCAC CGACCGCATC CTGGTGCAGG TTCCCGGCCT GCAGGATCCC
ACTCAGCTCA AGGATCTGCT CGGCAAGACC GCGAAGATGG AATTCCGCAT GGTCGACACC
TCGGTGCCGC CCGACCAGGC GTTGCAGGGG CGGGTGCCGC CGGATTCCGA AGTCCTGCAG
AGCGCATCGC CGCCCAACCA GCCCTATGTC GTGAAGAAGC AAGTGCTGGT CTCCGGCGGT
GATCTCTCGG ACGCGCAGAC CGGCTTCGAC CAGCGCACCA ACGAGCCGAT CGTGACCTTC
CGCTTCAACT CGGCCGGGTC GCGCAAATTC GCGCAGGCGA CCACCGAGAA TGTCGGGCAG
CCCTTCGCGA TCGTGCTCGA TAACAAGGTG ATCTCGGCGC CGGTCATCCG CGAGCCGATC
ACCGGCGGTT CGGGCCAGAT CTCCGGCAAT TTCACCGTGC AGTCCGCCAA TGAGCTTGCG
ATCCTGCTGC GCGCCGGCGC GTTGCCGGCG CCGCTGACGG TGATCGAGGA GCGCACCGTC
GGTCCGGGCC TCGGCGCCGA TTCGATCGCC AAGGGCGAGC TCGCCTCCTA TGTCGGCTCG
ATCCTGGTCA TCGTGTTCAT GCTGGTGACC TACCGGCTGT TCGGCGTGTT CGCCAACATC
GCCGTCATCA TCAACGTCGC CATGATCTTC GGCGTGCTGT CGCTTTTGAA TGCGACGCTG
ACCTTGCCGG GCATCGCCGG CATCGTGCTG ACGGTCGGCA TCGCCGTGGA CTCCAACGTG
CTGATCTATG AGCGCATCCG CGAGGAGCTG CGCGGCGGCC GCAACGCCAT CTCGGCGATC
GACGCCGGCT TCAAGCGCGC GCTGGCGACC ATTCTCGACT CCAACATCAC GACCTTCATC
GCCGCCGCCG TGCTGTTCTA CATCGGCACC GGCCCGGTGC GCGGCTTCGC CGTGACCTTG
GGCGTCGGCA TCCTCACCAC GGTCTTCACC GCCTTCACGC TGACGCGTCT GATCGTCGCG
TGGTGGGTGC GGTGGAAGCG GCCGCAAAGC GTGCCAATCT AG
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| Protein sequence | MLYFTRWKAL GIILTALVVC LCAVPNFFPE ATVKTWPAWA QRHIVLGLDL QGGSYLLLEV
DSNFVKKERL DAVRDDVRRT LRDAKIGYTG LVSRGDGVEV RITKDTDAPT ALSKLRELSQ
PLGGLLGSSG QRSLEVSDAG GGLIRLTIPQ AAITERIRQT IEQSIQIVER RVNELGTVEP
VIQRQGTDRI LVQVPGLQDP TQLKDLLGKT AKMEFRMVDT SVPPDQALQG RVPPDSEVLQ
SASPPNQPYV VKKQVLVSGG DLSDAQTGFD QRTNEPIVTF RFNSAGSRKF AQATTENVGQ
PFAIVLDNKV ISAPVIREPI TGGSGQISGN FTVQSANELA ILLRAGALPA PLTVIEERTV
GPGLGADSIA KGELASYVGS ILVIVFMLVT YRLFGVFANI AVIINVAMIF GVLSLLNATL
TLPGIAGIVL TVGIAVDSNV LIYERIREEL RGGRNAISAI DAGFKRALAT ILDSNITTFI
AAAVLFYIGT GPVRGFAVTL GVGILTTVFT AFTLTRLIVA WWVRWKRPQS VPI
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