| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_4342 |
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| Symbol | |
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| ID | 5152281 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | + |
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| Start bp | 4557293 |
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| End bp | 4561513 |
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| Gene Length | 4221 bp |
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| Protein Length | 1406 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640559156 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001240293 |
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| Protein GI | 148255708 |
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| COG category | [R] General function prediction only
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0457] FOG: TPR repeat
[COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.603254 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGAGC CCGCCTTCGC CTTACGTCCT CGGAGTATCA ACGCCTCGAC CGGTCCCGTC
GCGCCTTCGG CGACGGCGAT CGATGAACGT GCTTTGCGGA TCACCGAACA GGCCTACCGA
AAAGTGCTGG CGCTCCAACC GCACCATTTC CGCACCTTGT GCGGCCTCGC CATGGTGCGG
CTGCAGTTGG GCGACGTCCA CGAAGCGCGC ACCCTGCTCG ATCAGGCAGC GCGCGAGGCC
GGCGACTCCG CGGAATTTCA TCTGATGCTC GGCAAGGCCT TCGCTGGCCT GGGCGACCTG
GCGACCTCGA GCGTCCATTT CCAGCGCGCC GTGGCGCTCG ACGACACGCT GATCCAGGCC
CGGATCCTGC TGGGCAGCGC ATTCACCAAC CTCGGAGATC CGGCAGGCGC AGTCCGGCAC
CTTGAGCTTG CGCTCGCGGC CGACGCAGAT GATGCCGACG CCCATCAGAC CCTTGGCTTC
GCGCTGCAGC GCCTCGGACA ATTCGAGCGC GCGATGTCGC ATCACGAGGC GGCACTCGCG
GCCCGGCCGC AATTCGCCGC CGCCGCTGCG AGTCTCGGAG ACGCCTGCCG CCAGCTCGGC
CGGCATGCCG AAGCCATCGC CCATTACGAG CGCGCTCTCA CGCTCCAGCC CAATGCCCCA
GCCGTCCTGC TCAATATCGG CGGCTGCCAG CAGGCCATCG GCCAGACCGA GGCCGCGGTC
CGCACCTATC AACGCGCCCT CGTCCTGAGC CCGCATCTCG CCGAGGCGCA CTACAACCTC
GGCAACCTTC ATCTGGAGAT GAACAGCTGG CCGATCGCAG TCTTCCACTA CGAGCGCGCG
ATCGCCGAAC GGCCGGATTT TCCGGAGGCC CACAATAATC TCGCCAATGC GCTGCAGTCA
CGCGGCCGGC ATGAGGAGGC GCTGGCGCAT TATGACGAGG CGCTGCGCCG CAGGCCGAGC
TACGCAATCG CGCACCGCAA CCGCGCTGAT ACTCTGCGCA ACATGAAGCG GTTCGACGAG
GCCATCGCCG GTTATCACGA CGCCCTCGCC CTCGAACCCG CCGATACGAC GACCTTGAAT
CATCTCGCCG GCGTGCTGAT GATCGTCGGC CGGCTCGACG AGGCCGAACA GGCCTACCGA
TCGGCGCTGG CGATCAATCC CCGCAACATC GGCGTCCATC TCAATTACGG CGTCGTCAAG
CCGTTCACGG TCGATGATTC GCGTTGGCCG GCGCTGCAGG ATCTGGCGGC GAGCGTAGAG
ACGCTGAGCG ACGACGCACG CATCACGCTG CACTTCACGC TTGGCCGCGC CTATGCCGAC
GTCAAGGACG GCGAAAAGTC ATTGCGGCAC CTTCAGGCCG GCAATGCGCT CGAGCGACGC
CGCATCAGCT ATGACGAGAA CCAGACGCTG CGTCAGATGG AGCGCATCCG CGACGTGTTC
TCCCGGGACA TGCTGCAGGC GCGCGCCAAT CATGGTGACC CGTCGACCGC CCCCGTGTTC
GTGATCGGCA TGCCGCGCTC CGGCACCAGC CTCATCGAGC AGATCCTCTC GAGTCACCCG
GCGGCTTACG GGGCCGGTGA GGTGAACTAC TTCGCGGCCG CGACCGGGCT GTTCACCGAT
CGTGCACGCA GCGACTATCC GGACATGCTG GCCAAGCTCG CAGATGCCGA TCTTGGCTCG
ATCGCCGAGG CCTATCTCGC GCGCTTTACC GATCTGCCCG CAGGTGTGAC CCGCATCGTC
GACAAAATGC CCTCGAACTT CCTGTTTGCG GGCCTGATCT ATCTTGCGCT GCCCAACGCG
CGCATCATCC ACGTCCGACG CAATCCGATC GACACCTGCC TGTCCTGCTT TTCCCAGCTG
TTTTCGGAGC CGCAGCCCTT TTCCTACGAT CTGGCCGAGC TCGGCCGCTA CTACCGTGCC
TATGAGGCGC TGATGGAGCA CTGGCGCGCG ATCCTGCCGG ACGGCGTGAT GCTCGATGTG
GCCTACGAGG ACGTGGTGCG CGATTTCGAG CCCCACGCGC GCAAGATCGT CGCCCATGCC
GGCCTCGACT GGGATGAACG CTGCCGTTCG TTCCACGAGA CCAAGCGGCC GGTCAACACT
GCGAGCCTGG TCCAGGTGCG CAAGCCGCTG TTCACCGGAT CGGTCGGCCG CTGGCGGCTG
TATGGCGACC GGCTCAAGCC GTTGCTCGAC GCGCTGGGTC CAGCCGAGGT GCAGGCGCCC
GTCGCCGACG CCATCTCCGG CTCGATGCAG CCGTCGCCGA CGAACCTCGC GCCGCCGGTG
GCCACACCGA TCGGCGACAC CCCGCTTTTC GATGCCGACC AACTCGGAGC TTTGCAGACG
CTGGCGGACG GCGCGGTGGC GGTGGCCAGG AAGCTCCAGG GGCGCGGCGA CAACAATGAT
GCGGAAGCGA TCTTCCGGCT GATCCTCGCC GGCCAGCCAC GCCAGTTCGA CGCGCTGGTC
GGGCTCGGCA TGATCTGCAG CGGCAGCAGC CGGCTCGACG AGGCGAAGGA TTGCTTCCAG
CGGGCGGTCG CCGTCAACGC GAAATCCGCC GAGGCCCATG GCAGCATCGG CGCGGTCGAG
GCTTCGGCCG GACGTTACGA TGCGGCCGTC GGCCATTACG AGACTGCGCT CTCTCTGTCC
CCGAACCATC CCGGCATTCT CTACGCCTTC GCGATGGTGC GCCAGAACCA GGGGATGAGC
GAGGAGGCGA TGGTGCTGCT GCGGCGCGCC ATCGAGAACA AGCCGCAGCA TCTCGACGCC
CATTTTGCCC TGGGCAACCT GCTCTACACG GCCGGCAAGG ATATTGAAGC GGCGAAGTGC
TACCTCAAGG TTCTCGAGTT CAGCCCGGAG CACGCCGAAA CGCACAACAA CATTGCCAAT
GTGCTATTGC GCCAGGGCCA TCGCGAGCGC GCCATCGAGC ATTACAAGCG GGCGATCGCG
AGCCGCCCCG ACTATGGCGA TGCCTATGGC AATCTCGGCA ATGCCTATCT CGAGCTCAAT
CGCCTCGAAG AAGCGATCGA GCAGAACCTG CTCGCGCTCA AGCTGAAGCC GGAGCGGTTC
GGCTCATACA ACAATCTGGG CGTGGCCTAT CAGGCGCTCG GCCGCTTCGA GGAGGCGACC
GCAGCGTTCG AGAAGGCGCT GGAGCTGGCG CCGGACGATG CGCCGATCCA CCTCAACCTC
GCCAACATGG CGAAGTTCAA GCCGGACGAT CGGCGGCTGC CTGGACTGCG GGCGTTGGTC
GAACGTGCTG ATCAGCTCGA TCAGGAAAAG CAGATCGCCG CTCATTTCGC GCTCGGCAAA
GCGTTGTCCG ATCTCAAGGA CTACGATGCT GCGTTCGCGC ATCTACGCCA GGCGAACACG
CTCAAGCGCC AGAGCTTCGA CTACGATTCG GAGCAGCGTC TTGCGATGAT GAAGAATGTG
GCCAGCCGCT TCACGCCGGA ATTCTTCCGT TCGGTGGTCG GACATGGCGA CGAGTCCTGG
GCGCCGATCT TCATCGTCGG CATGCCGCGC TCCGGCACGA CCCTCATGGA ACAGGTGCTA
TCGAGCCATT CGAAGGTATT CGGGGCCGGC GAGCTCGAGA CGTTCAAGGA GCTCGTGGGC
GAATGCGCCA ACCGTCAGAG GGTGCCCCCT GCCTTTCCCG ACCTGATCGC GCTGCTGCCG
CCGGAGGAGA TGACCGCGCT CGGCCGGGAA TATACGGCCC GCGTGCGCGT CCTGGCCCCC
GAGGCCGAGC GTATTGTCGA CAAGATGCCG CTCAACTTCC TGTTTGTCGG ACTGATCCAT
GCCGCCTTCC CTCGCGCCAG AATCATCAAC ACCCGGCGTG ATCCGCTGGA CAATTGCGTC
TCCTGCTACT CGCTGCTGTT CACAGGAGCG CAGCCTTTCG CCTATGACCT GACCGAGCTC
GGCCATTACT ACAGGGGCTA TGAGCGCGTG ATGGAGCACT GGCACGCCGT GCTGCCGCCC
GGTGTCCTGA TGGACGTCCA ATATGAGGAT CTGGTCGATG ATCTCGAGGG CGTCTCGCGC
CGCGTGCTCG CCCATTGCGA CCTTGACTGG GAAGAAGCGT GCCTCGACTT CCACCGGACC
GAGCGCATGG TGCGGACGGC CAGCCTGATG CAGGTGCGCG AACCACTCTA CCGCCGCTCG
ATCGGCAGCT GGCGCCGTTA TGAGAAGCAT CTCGGGCCGC TCTACGAGGC GCTCGGCATC
GCGTCTCCGC CGCCAGCCTA G
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| Protein sequence | MNEPAFALRP RSINASTGPV APSATAIDER ALRITEQAYR KVLALQPHHF RTLCGLAMVR
LQLGDVHEAR TLLDQAAREA GDSAEFHLML GKAFAGLGDL ATSSVHFQRA VALDDTLIQA
RILLGSAFTN LGDPAGAVRH LELALAADAD DADAHQTLGF ALQRLGQFER AMSHHEAALA
ARPQFAAAAA SLGDACRQLG RHAEAIAHYE RALTLQPNAP AVLLNIGGCQ QAIGQTEAAV
RTYQRALVLS PHLAEAHYNL GNLHLEMNSW PIAVFHYERA IAERPDFPEA HNNLANALQS
RGRHEEALAH YDEALRRRPS YAIAHRNRAD TLRNMKRFDE AIAGYHDALA LEPADTTTLN
HLAGVLMIVG RLDEAEQAYR SALAINPRNI GVHLNYGVVK PFTVDDSRWP ALQDLAASVE
TLSDDARITL HFTLGRAYAD VKDGEKSLRH LQAGNALERR RISYDENQTL RQMERIRDVF
SRDMLQARAN HGDPSTAPVF VIGMPRSGTS LIEQILSSHP AAYGAGEVNY FAAATGLFTD
RARSDYPDML AKLADADLGS IAEAYLARFT DLPAGVTRIV DKMPSNFLFA GLIYLALPNA
RIIHVRRNPI DTCLSCFSQL FSEPQPFSYD LAELGRYYRA YEALMEHWRA ILPDGVMLDV
AYEDVVRDFE PHARKIVAHA GLDWDERCRS FHETKRPVNT ASLVQVRKPL FTGSVGRWRL
YGDRLKPLLD ALGPAEVQAP VADAISGSMQ PSPTNLAPPV ATPIGDTPLF DADQLGALQT
LADGAVAVAR KLQGRGDNND AEAIFRLILA GQPRQFDALV GLGMICSGSS RLDEAKDCFQ
RAVAVNAKSA EAHGSIGAVE ASAGRYDAAV GHYETALSLS PNHPGILYAF AMVRQNQGMS
EEAMVLLRRA IENKPQHLDA HFALGNLLYT AGKDIEAAKC YLKVLEFSPE HAETHNNIAN
VLLRQGHRER AIEHYKRAIA SRPDYGDAYG NLGNAYLELN RLEEAIEQNL LALKLKPERF
GSYNNLGVAY QALGRFEEAT AAFEKALELA PDDAPIHLNL ANMAKFKPDD RRLPGLRALV
ERADQLDQEK QIAAHFALGK ALSDLKDYDA AFAHLRQANT LKRQSFDYDS EQRLAMMKNV
ASRFTPEFFR SVVGHGDESW APIFIVGMPR SGTTLMEQVL SSHSKVFGAG ELETFKELVG
ECANRQRVPP AFPDLIALLP PEEMTALGRE YTARVRVLAP EAERIVDKMP LNFLFVGLIH
AAFPRARIIN TRRDPLDNCV SCYSLLFTGA QPFAYDLTEL GHYYRGYERV MEHWHAVLPP
GVLMDVQYED LVDDLEGVSR RVLAHCDLDW EEACLDFHRT ERMVRTASLM QVREPLYRRS
IGSWRRYEKH LGPLYEALGI ASPPPA
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