| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_4316 |
|---|
| Symbol | |
|---|
| ID | 5151763 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 4518985 |
|---|
| End bp | 4524072 |
|---|
| Gene Length | 5088 bp |
|---|
| Protein Length | 1695 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640559132 |
|---|
| Product | sensor histidine kinase |
|---|
| Protein accession | YP_001240269 |
|---|
| Protein GI | 148255684 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase
[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.946527 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGGAG CAGTGATTGT CATTACGGGC GCGCAGGGGG CGCTAGGGCG GAGCGTTGCC
GATCTCGCTC TGGCGCGGGG CGCGCACGTG GCCGGAATCG ATCATGCCCA GGCAGAAATC
CCAGCCAGCG ACGACCGCAT CGAACTCGGA GGGGTCGACT TGTCCGATCC CGAACAGGCG
AAGGTCGCAA TCGACTCGGT CGCGGCCCAT TTCGGCACTC TGGATGCCCT GATCAACATC
GCCGGCGCAT TTGCGTTCGA GAATGCAGCC GATGGCGACG ATACGGTCTG GGACAAGATG
CATGCGCGCA ATCTCATGAC GGCGCTGCAT GCCTCGCGCG CTGCAATCCC GCATCTGGTG
CGTTCCAGCA CCGGCCGCAT CGTCAATATC GGCGCGATGG GCGCGCTGCA GGCCGGCGCC
GGCATGGGCC CCTACGCTGC CTCCAAATCC GGTGTGCATC GCCTGACCGA GGCGCTCGCA
TCGGAGTGGA AAGGCAAGGA CCTGACCGAC AGCGTCAACT CGATGGCCTC CAACCTGACC
GGCCAGGTTC GTAACATCGC CGAAGTGGCC ACCGCCGTCG CCAAGGGCGA TCTCTCCAAG
AAAATCACCG TCAATGTGTC AGGCGAGATT CTCCAGCTGA AGGAGACGCT GAACACGATG
GTCGATCAGC TCAACGCCTT CGCCGGCGAG GTCACGCGCG TCGCCCGTGA GGTCGGCACC
GACGGCAAGC TCGGCGGCCA GGCCGAGGTG CCGGGCGTCG CCGGCACCTG GAAGGATCTC
ACCGACAGCG TCAACTCGAT GGCCGGCAAT CTCACCGCCC AGGTCCGCAA CATCGCCGAG
GTGGCCACCG CCATCGCCGG TGGCGACCTG TCGCGCAAGA TCACGGTCGA CGTCCGCGGC
GAGATCCTGA GCCTGAAGGA AACGCTGAAC ACGATGGTGG ATCAGCTCAA CCGCTTTGCC
GGCGAGGTGA CGCGCGTCGC CCGCGAGGTC GGCACCGAGG GCCGGCTCGG CGGCCAGGCC
AACGTGCCCG GCGTCGCCGG CACCTGGAAG GATCTCACCG ACAGCGTCAA CTCGATGGCC
GGCAATCTCA CCGCCCAGGT CCGCAACATC GCCGAGGTTA CCACAGCCGT GGCGCGCGGC
GACCTGTCAC GCAAGATCAC TGTCGACGTG AAGGGCGAGA TTCTCGAGCT GAAGAACACC
ATCAACACCA TGGTCGACCA GCTCAATGCC TTCGCATCCG AGGTGACGCG CGTCGCCCGC
GAGGTCGGCA CCGAAGGCAA GCTCGGCGGC CAGGCCGAGG TGCCTGAAGT CGCCGGCACC
TGGAAGGACC TCACCGACAG CGTCAACTTC ATGGCTTCCA ACCTGACGGC GCAGGTCCGC
AACATCGCCG AGGTCGCGAC CGCCATCGCC GGCGGCGACC TGTCGAAGAA GATCACCGTC
GACGTGCGCG GCGAGATCCT GCTGCTCAAG GACACCTTGA ACACGATGGT CGAGCAGTTG
CGCTCTTTCG CCGCCGAGGT GACGCGCGTG GCGCGCGAGG TCGGCACCGA GGGCCGGCTC
GGCGGCCAGG CCGTGGTGCC CGGCGTCGGC GGCACCTGGA AGGATTTGAC CGACAACGTC
AACCTGCTCG CGGCCAATCT CACCACGCAG GTTCGCAACA TCGCCGAGGT CACCACGGCG
GTTGCGCGCG GCGACCTGTC GCGCAAGATC ACCGTCGACG TGAAGGGCGA GATTCTCGAG
CTGAAGAACA CCATCAACAC GATGGTCGAT CAGCTCAACG CCTTCGCCGG CGAGGTGACA
CGCGTGGCCC GCGAGGTCGG CACCGAAGGC AAGCTCGGCG GCCAGGCCCA GGTGCCAGGT
GTCGCCGGAA CCTGGAAGGA CCTCACCGAC ACCGTGAACT TCATGGCGGC CAACCTGACC
GAGCAGGTCC GCGGCATCGT CAAGGTGGTC ACGGCCGTGG CCAATGGCGA TCTCAAGCAG
AACCTGACCG TAAAGTCCAA GGGTGAGGTC GCAGCCCTCG CCGACACCAT CAATAACATG
ACCGAGACGC TCGCGACCTT TGCCGATCAG GTCAGCAGCG TGGCCCGCGA GGTCGGCGTC
GAAGGGCGGC TCGGCGGCCA GGCCAACGTG CCTGGCGCGG CCGGCACCTG GAAGGATCTG
ACCGGCAACG TCAACCTGCT CGCGGCCAAC CTGACCTCGC AGGTCCGCGC CATCGCCGAA
GTCGCGACTG CCGTGACCAA GGGCGACCTC ACGCGGAGCA TTCAGGTCGA TGCGCGCGGC
GAGGTGGCCG AGCTCAAAGA CAACATCAAC ACCATGATCA CCAACCTGCG GCTCACGACC
GACCTCAACA CCGAGCAGGA CTGGCTGAAG ACGAACCTCG CCCGCTTCAC CAACATGCTG
CAGGGGCAGC GCGACCTGAC AACCGTCGGC CGCCTGCTGC TCAGTGAGTT GACGCCGCTC
GTGAATGCGC ATCGCGGCGT GATCTACCAG GTCGAGAACG AGTATACGCC GCAGCTTCGC
CTGCTCGCCT CCTACGCCGA TGACGGCGTG TATCCCCATC GCCAGTCGGT CCAGTTCGGC
GAAGGGCTGA TCGGCCAGTG CGCCATCGAC AAGCGGCAAC GGCTGATCTC CGAGATTCCA
TCCGACGTCA TTCCGGTCGG CTCTGCTTTG CTTCGCGCCG TCCCTAAGAA CCTCGTCGTG
CTCCCTGTGC TATTCGAGAA CCAGGTCAAG GCGGTGATCG AGCTGGCGTC GCTCAGCCCG
TTCACGACGT CGCAGATGAC GTTTCTGGAG CAGCTCACCG ATTCCATCGG CATCGTGCTC
AACTCGATCG AAGCCACCAT GCAGACCGAG GGCCTGCTCA AACAGTCCCA GCAATTGGCG
GCAGAGCTGC AGGCGCAGCA GCGCGAGCTG CAACAGACCA ACGAGCAGCT CGAACAGAAA
GCCCAGCAGC TGGCCGAGCG CAACGTCGAG GTGGAACGCA AGAACCAGGA GATCGAGCAG
GCCCGGCGCG CGCTCGAGGA AAAGGCAACG GAGCTTGCCC TCACCTCCAA GTACAAGTCC
GAGTTCCTGG CCAACATGTC GCACGAGCTG CGCACGCCGC TCAACAGCAT CCTGATCCTG
GGCCAGCAGC TGACCGAAAA CCCCGACGGC AACCTCACCA TGAAGCAGGT CGAATTCGCC
CGCACCATTC ATGGCGCAGG CACCGACCTT CTCAACCTGA TCAGCGACAT TCTCGATCTG
TCCAAGATCG AGTCCGGCAC GGTGACCGTC GACGCCGAGG AGATCCTCAC CGCCAACCTC
CTGGAGACGG TCGGCCGTCC GTTCCGGCAC GAGGCGGAAA ACCGCCTGCT GTCCTTCAAT
ATCGATGTCG ATCCGAACCT TGCGCGAAGC ATCGTCACGG ATTCCAAGCG GCTGCAGCAG
GTGCTGAAGA ACCTGCTTTC GAATGCCTTC AAATTCACTG CGGACGGCGG CGTCCGGCTG
AAAGTCTCGG CTGCACTTGG CGGGTGGAGC GCTGAGCATC CGGTCCTCAA CACCGCGCCG
GCCGTCATCG CCTTTGAAGT CTCCGACACC GGCATCGGCA TTCCCCAGGA CAAGCAGAAG
CTGATCTTCG AGGCCTTCCA GCAGGCCGAC GCCGGGACCA GCCGCAAATA TGGCGGCACC
GGGCTCGGGC TCGCCATCAG CCGCGAGCTC GCGAACCTGC TGGGCGGTGA AATTCATCTG
AAGAGCGCCC CCGGCAAGGG CAGCACGTTC ACACTTTACC TGCCGCTGAA ATATTCCGGT
CCGGCCGTCG CTCCGCGCAT CAGCCCGACA CCAGCTGCGT CCTACACTCC GCCGCTGCTG
CCGGCTCAGC AGCCTCCGGC CTCCGACCGC GTCGCCGAAC AGCTGGCCGA CGACAGGCTC
GAGCTCGCCC CCGGCGACAC GACCCTTCTG ATCGTCGAGG ACGACCCGCA TTATGCCCGC
GTGCTGATCG ATCTCGCGCG CGACAAGGGC TTCAAGATCC TGGTCGCCAC CCGCGGCGCG
GAAGCCCTCG ACCTCGCCAA GCAGTACCAG CCCGCAGCCA TTTCCCTGGA TGTGTTCCTG
CCGGACATGC TGGGCTGGAC GGTTCTGAGC CAGCTCAAGC ACAATCCTCT GACCCGGCAC
ATTCCGGTGC AGATCATCAC ATTGGACGAG GACCGTCAGC ATGCGCTGGC GCGTGGAGCG
TTCTCCTTCG TCAACAAGCC GACAACCACC GAGGGCGTGA GTGCCGCGCT CAGCCAGATC
AAGGAGTACG CGCAGCCGCG CCGCAAGCGC CTGTTGATCG TCGAGGACAA TGCGGCCGAA
CAGCTCAGCA TCCGTCAGCT GCTTGATCAT GACGACATCG AGATCCTCGC AGCGGACACC
GGTGCGGGCG CGCTGGAGGC GCTGCGCGGC ACGCCCTGCG ATTGCGTCGT TCTCGATCTC
CGCCTCCCGG ACATGAGCGG ATTCGACGTG CTCGATCAGT TGCGTTCGGA CGAAACCCTG
TCAGGCATTC CTGTCGTCGT CTTCACCGGC CGTGAATTGT CCGCCGAGGA GGACGCGGAA
CTACACACGA TGGCCCGCAG CATCGTCGTG AAGGGCGTGG AGTCGCCGGA GCGGCTGCTC
GACGAGACAG CCTTGTTCCT TCACCGCGTC ATCACGGAAC TGCCGATAGA AAAGCAGCGA
ATGCTCGAAA AGCTGAACAG TTCCGACGAA GACCTCGTCG GAAAAACGGT TCTGCTGGTC
GACGACGACG CCCGCAACAT CTTCGCGCTG TCGAGCGTGC TGGAGCGCCG CGGCATGAAG
GTGCTGACCG CGACGACCGG CGCCGAAGCG ATCGACTTGG TGCAGAGCAC GCCTGCGATC
TCGATCGTGC TGATGGACAT CATGATGCCG CAGATGGATG GTTACCAGAC GATCGGCGTC
ATCCGGCAGA ACCCTGCCTT TGCCCGGCTC CCGATCATCG CGCTGACCGC GAAGGCCATG
AAGGGAGATC GCGAGAAGTG CCTCGAAGCC GGCGCTTCCG ATTATCTCGC AAAACCCGTC
AACACCGAGC AGTTGCTTCT TGCGATCCGC ATGTGGCTGC ACCGCTGA
|
|---|
| Protein sequence | MNGAVIVITG AQGALGRSVA DLALARGAHV AGIDHAQAEI PASDDRIELG GVDLSDPEQA
KVAIDSVAAH FGTLDALINI AGAFAFENAA DGDDTVWDKM HARNLMTALH ASRAAIPHLV
RSSTGRIVNI GAMGALQAGA GMGPYAASKS GVHRLTEALA SEWKGKDLTD SVNSMASNLT
GQVRNIAEVA TAVAKGDLSK KITVNVSGEI LQLKETLNTM VDQLNAFAGE VTRVAREVGT
DGKLGGQAEV PGVAGTWKDL TDSVNSMAGN LTAQVRNIAE VATAIAGGDL SRKITVDVRG
EILSLKETLN TMVDQLNRFA GEVTRVAREV GTEGRLGGQA NVPGVAGTWK DLTDSVNSMA
GNLTAQVRNI AEVTTAVARG DLSRKITVDV KGEILELKNT INTMVDQLNA FASEVTRVAR
EVGTEGKLGG QAEVPEVAGT WKDLTDSVNF MASNLTAQVR NIAEVATAIA GGDLSKKITV
DVRGEILLLK DTLNTMVEQL RSFAAEVTRV AREVGTEGRL GGQAVVPGVG GTWKDLTDNV
NLLAANLTTQ VRNIAEVTTA VARGDLSRKI TVDVKGEILE LKNTINTMVD QLNAFAGEVT
RVAREVGTEG KLGGQAQVPG VAGTWKDLTD TVNFMAANLT EQVRGIVKVV TAVANGDLKQ
NLTVKSKGEV AALADTINNM TETLATFADQ VSSVAREVGV EGRLGGQANV PGAAGTWKDL
TGNVNLLAAN LTSQVRAIAE VATAVTKGDL TRSIQVDARG EVAELKDNIN TMITNLRLTT
DLNTEQDWLK TNLARFTNML QGQRDLTTVG RLLLSELTPL VNAHRGVIYQ VENEYTPQLR
LLASYADDGV YPHRQSVQFG EGLIGQCAID KRQRLISEIP SDVIPVGSAL LRAVPKNLVV
LPVLFENQVK AVIELASLSP FTTSQMTFLE QLTDSIGIVL NSIEATMQTE GLLKQSQQLA
AELQAQQREL QQTNEQLEQK AQQLAERNVE VERKNQEIEQ ARRALEEKAT ELALTSKYKS
EFLANMSHEL RTPLNSILIL GQQLTENPDG NLTMKQVEFA RTIHGAGTDL LNLISDILDL
SKIESGTVTV DAEEILTANL LETVGRPFRH EAENRLLSFN IDVDPNLARS IVTDSKRLQQ
VLKNLLSNAF KFTADGGVRL KVSAALGGWS AEHPVLNTAP AVIAFEVSDT GIGIPQDKQK
LIFEAFQQAD AGTSRKYGGT GLGLAISREL ANLLGGEIHL KSAPGKGSTF TLYLPLKYSG
PAVAPRISPT PAASYTPPLL PAQQPPASDR VAEQLADDRL ELAPGDTTLL IVEDDPHYAR
VLIDLARDKG FKILVATRGA EALDLAKQYQ PAAISLDVFL PDMLGWTVLS QLKHNPLTRH
IPVQIITLDE DRQHALARGA FSFVNKPTTT EGVSAALSQI KEYAQPRRKR LLIVEDNAAE
QLSIRQLLDH DDIEILAADT GAGALEALRG TPCDCVVLDL RLPDMSGFDV LDQLRSDETL
SGIPVVVFTG RELSAEEDAE LHTMARSIVV KGVESPERLL DETALFLHRV ITELPIEKQR
MLEKLNSSDE DLVGKTVLLV DDDARNIFAL SSVLERRGMK VLTATTGAEA IDLVQSTPAI
SIVLMDIMMP QMDGYQTIGV IRQNPAFARL PIIALTAKAM KGDREKCLEA GASDYLAKPV
NTEQLLLAIR MWLHR
|
|---|
| |