| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_4189 |
|---|
| Symbol | |
|---|
| ID | 5151787 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 4400676 |
|---|
| End bp | 4402151 |
|---|
| Gene Length | 1476 bp |
|---|
| Protein Length | 491 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640559017 |
|---|
| Product | XRE family transcriptional regulator |
|---|
| Protein accession | YP_001240154 |
|---|
| Protein GI | 148255569 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3800] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0115476 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.171074 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACCA CCACTGCGCG CTCGATCTTC ATGGGCCCGC GCCTGCGCCG CCTCCGGCGC
GAGCTCGGCC TCACCCAGGC CGACATGGCC GCGGACCTTG AAATATCAGC ACCTTACGTG
GCGCTCCTGG AGCGGAACCA GAGGCCGGTA ACCGCCGACA TGCTGCTGCG GCTCGCCCGG
ACCTACAAGA TCGACCTCGC CGATCTCGCT GGCGACGGCG GCGCAGACCA TACCGCGCGG
ATGCAGTCGA TCCTCAAGGA CCCGATGTTT TCGGACATCG ACATCCCCGC CCTGGAGATC
TCCGACCTCG CCGTCAGCTA TCCCGGCATG ACCGAGGCCT TCCTGCGGCT CTATACGGCC
TATCGCGAGG AGCAGCTGGC GCTGGCCGAG CAGCGCGCGC CGGTGCCCGC CGGCAGCGCA
TCCGGGCCGG GAGTGGATGG TTTCGACGCC AACGATCCCG TCGCCGAGGT GCGACGGTTC
CTGGCGGCAC GCCGCAACAA TTTCGCCCAG CTCGACGACG CCGCCGAGCG GCTGGCGCAG
ACGATGGTCC AGGGCTCGGC GACCGGCTCG GCGCAGGTCT CGGCCAGCCC TTCGGGCTTC
ATCGAGCGGT TTCGCACGCG GCATAATCTG CAGGTCCGCT ACATGCCGCC GAACGTGATG
CTCGGCTCGC TACGACGGCT CGATCTGCAC CGGCGGCAAT TGCTGATCGA GGACTCGCTC
GACAGCGCGA GCCTGAAGTT CGAGCTGGCA CGGCAGCTCG CTTATCTCGA GCTCGACAAT
GAGATCGGCA CAGCGCTGGA GGACGGCAAG TTCGCCAGCA AGACCGCGGA GCTCCTGGCG
CGCCGTGCGC TCGCGGCCTA CGCCGCGGCG GCGATCATCA TGCCCTACTC GATCTTCGCC
AAAGCCGTCG ATACCAGGGC CTACGACCTC GAGGCGCTGG CGCGGCAGTT CGGCACCAGC
TTCGAACAGA CCGCGCACCG CGTCACGACC TTGCAGAAGC CGGGCGCCGA AAAGATCCCG
TTCTTCCTGA TCCGCGTCGA TCCCGCCGGC AACGTCTCGA AACTGCTCGA CGGCGCCGGC
TTTCCGTTCG CACGTCATGG CGGCGCCTGC CCGCTGTGGT CCGTGCACGG CATCTTCAAG
ACGCCGCGCC AGATCGTGAC GCAATGGCTG GAACTGCCGG ACGGCCGCCG CTTCTTCTCG
ATCGCGCGCA CGGTGACCGC CGGCGGCGGC TCCTATGGCG CCGTCCGCGT CGAGCGCGCG
ATTGCGGTGG GCTGCGCGGC CGAGCATGCC GGCCAGTTGA TCTACACCCG CGACGGCCAC
GGCCCGCGCG CCGACGAACC GACCCCGATC GGCACCGCCT GCCGGGTCTG CCACCGGCCG
AAATGCGCGG CACGTTCGGC GCCGCCGATC GGCCGCGAGA TCCTGCCCGA CGATTTCCGC
ACCTCGTCGA TCCCGTTCGG CTTCTCGGCG GATTGA
|
|---|
| Protein sequence | MTTTTARSIF MGPRLRRLRR ELGLTQADMA ADLEISAPYV ALLERNQRPV TADMLLRLAR
TYKIDLADLA GDGGADHTAR MQSILKDPMF SDIDIPALEI SDLAVSYPGM TEAFLRLYTA
YREEQLALAE QRAPVPAGSA SGPGVDGFDA NDPVAEVRRF LAARRNNFAQ LDDAAERLAQ
TMVQGSATGS AQVSASPSGF IERFRTRHNL QVRYMPPNVM LGSLRRLDLH RRQLLIEDSL
DSASLKFELA RQLAYLELDN EIGTALEDGK FASKTAELLA RRALAAYAAA AIIMPYSIFA
KAVDTRAYDL EALARQFGTS FEQTAHRVTT LQKPGAEKIP FFLIRVDPAG NVSKLLDGAG
FPFARHGGAC PLWSVHGIFK TPRQIVTQWL ELPDGRRFFS IARTVTAGGG SYGAVRVERA
IAVGCAAEHA GQLIYTRDGH GPRADEPTPI GTACRVCHRP KCAARSAPPI GREILPDDFR
TSSIPFGFSA D
|
|---|
| |