| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_4157 |
|---|
| Symbol | mfd |
|---|
| ID | 5149191 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | - |
|---|
| Start bp | 4364302 |
|---|
| End bp | 4367817 |
|---|
| Gene Length | 3516 bp |
|---|
| Protein Length | 1171 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640558986 |
|---|
| Product | transcription repair coupling factor |
|---|
| Protein accession | YP_001240124 |
|---|
| Protein GI | 148255539 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
|---|
| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAGCC CGGTCAAGTC GCCTGCCGAG CATCTCGCGC CGGGCCGCGC GCTGACGCTC
GCCAATGTCG CCGAGGGGGC CGAGGGTCTG GTCGTCTCCG ACCTCGCGCG CGCGATCGCA
GCCAAGCCGA AGCCGCCGGC GGTGAGCCTC GCCGTGGTGT GCCGCGACGG CGCGCGGATG
CAGCAGCTGG CACGGGCGCT CGACTTCTTC GCGCCTGACC TGCCGGTGAT GCAGTTCCCG
GCCTGGGACT GCCAGCCCTA TGACCGCGTC TCGCCGCATG GCGGCATCCT GGCGCAGCGC
GTGACGACCT TGGCGCGGCT GTCGCGGCTG GCCGGCAGCG ACAAGCCGCT GATCGTGCTG
ACCACGGTCA ATGCGATCGT GCAGCGCGTG CCGTCGCGTG ACACCATGGC CGGGCAGGCG
CTGTCGGTGG CGCCGGGCCA TGTCGTGCCG ATGAACTCGG TGGTCGCCTG GCTCGAGCAC
AATGGCTATG TCAGGTCGTC GACCGTGCGT GAGAGCGGCG AATATGCCGT GCGCGGCGGC
ATCCTCGATC TGTTCCCCGC CGGCCTCGAC CAGCCGGTGC GTTTCGACTT CTTCGGCGAC
AGCCTGGAAT CGATCCGCAC CTTCGATGCC GAGACCCAGC GCACCCTGCT CGACATGCGC
TCGCTCGATC TGGTGCCGGT CTCCGAATTC CAGCTCGTCA CCGACACCAT CCGCCGCTTC
CGCATGGGCT ATGTCGCCGA GTTCGGCGCG CCTGAGCGCG ACGACGCGCT GTACGAGGCC
GTCAGCGAAG GCCGCCGCTA TCCCGGCATG GAGCACTGGC TGCCGCTGTT CCACGACAAG
ATGGAGACCT TGTTCGACTA TCTGCCGAAC ACGCCGATCG TGATCGAGCC GCAGGGCGAG
GACGCCGCGC GCGAACGCTT CAAGCAGATC ATCGATTATT ACGACGCGCG CCGCGAAGCG
ATGGAGCATC CCGGCGGCGG CGCGATCTAC AAGCCGCTGA CGGTCGACCG GCTATATCTG
ACATCGTCCG AATGGGCTGA GCGGCTGGAA AGCGTGCCGC TGGCGCGGAT GACTCCGTTT
GCCGTGCCCG AAGCGGCAGG CGTGGTCGAC ATCGGCGCGC GCCAGGGCCG CAATTTCGCG
CCCGAGCGCA ACGACGCCGC CGTCAACGTG TTCGAGGCCG TGGTGGCGCA TGTGCAGGCG
CTGCAATCGG TGCGCAAGAA GGTCGTGATC GCGCTGTGGA GCGAGGGCTC GCGCGACCGC
ATGGCCAGCA TGTTGAAGGA CCACAAGCTG ATCCATGTCA CCAGCGTCAA CACCTGGCGC
ATGGTGCAGG CGACGCCGCG CAACGAGACC ATGCTCGCGG TGCTCGGGCT GGAGACCGGC
TTCGAGACCG ACCAGATCGC CATCATCTCC GAGCAGGACA TTCTCGGCGA CCGCCTGGTG
CGGCCGCGCC GGGCGAGCCG CAAGCTCGAC AATTTCATCT CGGAGGTGAC GAGTCTGGCC
ATCGGCGACA TCGTCGTCCA TGTCGATCAC GGCATCGGCC GCTTCGTCGG CCTGCAGACG
CTGGAGGTCG CCGGCGCGCC GCATGACTGT CTCGAACTGC GCTATGCCGG CGAGACCAAG
CTGTATCTGC CGGTCGAGAA CATCGAGCTG CTGTCGCGCT ACGGCTCCGA CCAGACCAGT
GTCGAGCTCG ACAAGCTCGG CGGCTCCGGC TGGCAGACCC GCAAGGCGAA GCTGAAGAAT
CGCATCCGCG AGATGGCCGG CGAGCTGATC AAGATCGCCG CCGAGCGCAT GCTGCACGAG
GCGCCGAAGC TGCCGGTGCA GGCCGGCCTC TACGACGAGT TCTGCGCGCG CTTCCCCTAT
GACGAAACCG AGGACCAGCT CACCGCGATC CAGGCGACGC TCGCCGATCT CGAGGCGGGC
CGGCCGATGG ACCGGCTGGT CTGCGGCGAC GTCGGCTTCG GCAAGACCGA GGTGGCGCTG
CGCGCGGCGT TTGCGGTCGC GCTCGACGGC AAGCAGGTCG CTGTCGTCGT GCCGACCACG
CTGCTGGCGC GTCAGCACGC GAAAACTTTC ACCGAGCGCT TCAAGGGCTT TCCGGTCAAT
GTCGCGCAGG CGTCGCGGCT GGTCTCGACC AAGGAGCTCA ACCAGGTCAA GAAGGGGCTG
GCCGACGGCT CGGTCGACAT CGTCGTCGGC ACCCATGCGC TGCTCGGCAA GTCGGTCAAG
TTCCGCGACC TCGGCCTCGT CATCGTCGAC GAGGAGCAGC ATTTCGGCGT CGGCCACAAG
GAGCGGCTGA AGCAGCTGCG CGCCGAGGTG CACGTGCTGA CCCTGTCGGC GACGCCGATC
CCGCGCACCT TGCAACTCGC TTTGACCGGC GTGCGCGAGC TGTCGATCAT CGCCTCGCCG
CCGGTCGATC GTCTCGCCGT GCGCACCTTC GTCGCGCCGC ATGATCCCGT GATGATCCGC
GAGGCGCTGC TGCGCGAGCG CTATCGCGGC GGCCAGGCGT TCTATGTCGT GCCGCGCATC
GACGATCTCG CCGAGGTCAA GGAGTTCCTC GACAAGACCG TGCCGGAGAT GAAGGTCGCG
GTCGCGCATG GCCAGATGGC GCCGACGGTC ATCGAGGACA TCATCGGGGC GTTCTACGAC
GGCAAGTTCG ACATCCTGCT GTCGACCACG ATCGTCGAAT CCGGCCTCGA CATTCCCCGC
GCCAACACGC TGATCGTGCA CCGCGCCGAC ATGTTCGGCC TTGCGCAGCT CTATCAGCTG
CGTGGCCGCG TCGGCCGCTC CAAGCTGCGC GCCTATGCGC TGTTCACGCT GCCATCGACG
CACAAGATCA GTGCGCAGGC CGAGAAGCGG CTCGGCGTGC TGCAGTCGCT GGAGACACTC
GGCGCCGGCT TCCAGCTCGC CAGCCACGAT CTCGACATCC GCGGCGCTGG CAATCTGCTC
GGCGACGAGC AGTCCGGCCA CATCAAGGAG GTCGGCTTCG AGCTCTATCA GTCGATGCTG
GAAGAGGCGA TCGAGAACCT CAAGGCCGGC ATCACCGAGC CGACGGTCGA CCGCTGGTCG
CCGCAGATCA CGATCGGCAT GCCCGTGCTG ATCCCGGAGG ACTACGTCTC CGATCTGTCA
GTGCGGCTGT CGCTGTACCG CCGGCTGGCC GATCTCGAAA CCGACGAGGA GATCGAGAAT
TTCGCTGCCG AGCTGCGCGA CCGTTTCGGC AAGCTGCCGG ACGAGACGCG CTATCTGTTC
AAGGTCGCCG CGATCAAGAA CTACTGCCGC AGGGCCAATG TCGAGAAGGT CGATGCCGGC
CCGAAGGGCG CTGTCATCGC CTTCCGCGAC AACAGCTTCG CCTATCCGGA TCGCCTGGTC
GCCTTCATCA AGCGCCACGG CCAGGCCGCC AAGGTTCGCC CCGACATGAA GGTGGTGTTC
CTGCAGGTCT GGGAGACGCC GGAGGAGCGG CTCGAAGGCA CGACGGATAT TCTGAAGGAA
TTGGCGGAGC TCGCGGAGAA GAAGAAGGCG GCGTAG
|
|---|
| Protein sequence | MKSPVKSPAE HLAPGRALTL ANVAEGAEGL VVSDLARAIA AKPKPPAVSL AVVCRDGARM
QQLARALDFF APDLPVMQFP AWDCQPYDRV SPHGGILAQR VTTLARLSRL AGSDKPLIVL
TTVNAIVQRV PSRDTMAGQA LSVAPGHVVP MNSVVAWLEH NGYVRSSTVR ESGEYAVRGG
ILDLFPAGLD QPVRFDFFGD SLESIRTFDA ETQRTLLDMR SLDLVPVSEF QLVTDTIRRF
RMGYVAEFGA PERDDALYEA VSEGRRYPGM EHWLPLFHDK METLFDYLPN TPIVIEPQGE
DAARERFKQI IDYYDARREA MEHPGGGAIY KPLTVDRLYL TSSEWAERLE SVPLARMTPF
AVPEAAGVVD IGARQGRNFA PERNDAAVNV FEAVVAHVQA LQSVRKKVVI ALWSEGSRDR
MASMLKDHKL IHVTSVNTWR MVQATPRNET MLAVLGLETG FETDQIAIIS EQDILGDRLV
RPRRASRKLD NFISEVTSLA IGDIVVHVDH GIGRFVGLQT LEVAGAPHDC LELRYAGETK
LYLPVENIEL LSRYGSDQTS VELDKLGGSG WQTRKAKLKN RIREMAGELI KIAAERMLHE
APKLPVQAGL YDEFCARFPY DETEDQLTAI QATLADLEAG RPMDRLVCGD VGFGKTEVAL
RAAFAVALDG KQVAVVVPTT LLARQHAKTF TERFKGFPVN VAQASRLVST KELNQVKKGL
ADGSVDIVVG THALLGKSVK FRDLGLVIVD EEQHFGVGHK ERLKQLRAEV HVLTLSATPI
PRTLQLALTG VRELSIIASP PVDRLAVRTF VAPHDPVMIR EALLRERYRG GQAFYVVPRI
DDLAEVKEFL DKTVPEMKVA VAHGQMAPTV IEDIIGAFYD GKFDILLSTT IVESGLDIPR
ANTLIVHRAD MFGLAQLYQL RGRVGRSKLR AYALFTLPST HKISAQAEKR LGVLQSLETL
GAGFQLASHD LDIRGAGNLL GDEQSGHIKE VGFELYQSML EEAIENLKAG ITEPTVDRWS
PQITIGMPVL IPEDYVSDLS VRLSLYRRLA DLETDEEIEN FAAELRDRFG KLPDETRYLF
KVAAIKNYCR RANVEKVDAG PKGAVIAFRD NSFAYPDRLV AFIKRHGQAA KVRPDMKVVF
LQVWETPEER LEGTTDILKE LAELAEKKKA A
|
|---|
| |