| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_4153 |
|---|
| Symbol | |
|---|
| ID | 5149603 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 4359096 |
|---|
| End bp | 4360901 |
|---|
| Gene Length | 1806 bp |
|---|
| Protein Length | 601 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640558982 |
|---|
| Product | ABC transporter substrate-binding protein |
|---|
| Protein accession | YP_001240120 |
|---|
| Protein GI | 148255535 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.162536 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCTGC GCCGCTGTGC CGTGGTCATG GCGCTGTCGC TGTCCGTCCA CGGCTTCGCC
GCAACAGCCT CGGAAAGTTC GGCGATCGCG ATGCACGGCA GCCCGGCTTT GCCGGCCGAC
TTCCAGCACT TGCCCTATGT GAATCCGCAA GCGCCCAAGG GTGGCCGGCT GGTTTGGGGC
CTGCTTGGCA CCTTCGACAG CCTCAATCCC TTCATCGTGC GCGGCGTTGC GGTGCAACAA
ATCCGCACCC ATGTGTTCGA GAGCCTGCTG ACCCGCGGCA ATGACGAGCC GTTCACCCTG
TATGGACTGC TCGCGCGAAC CGTCGAGACC GACGACGAGC GCACCTATGT CACCTTCCGG
CTGGATCCGC GCGCCCGTTT TTCCGACGGG CAGCCCGTGC TGGCCGACGA CGTGTCATTC
TCCTGGAACC TGCTGCGTGA GCATGGCCGG CCGAACCACC GGCAGTTCTA CGGCAAGGTG
GCCAAGGTCG AGGTGCTCGA TCCGCTCACG ATCCGGTTCG ATTTCGGCGG CGTCGCCGAT
CGCGAACTGC CGCTGATCCT CGGCCTGATG CCGATCCTGC CGAAGCACGC CACCGATGTC
GCGACCTTCG AGGACACGTC GATGGCGGCC CCGGTCGGCT CCGGCCCCTA CCGCGTCACC
GCGGTCCGGC CGGGCGCAAG CGTCACCCTG ACCCGCAATC CGGATTATTG GGGCCGCGAC
CTGCCGATCA ATCGGGGATT GTGGAACTTC GACGAGATCC GGCTGGACTA TTATCGCGAA
GCCAATGGGC AGTTCGAAGC CTTCAAACGC GGGCTCTACG ATGTCCGCGT CGAGAACGAG
CCGCTGCGCT GGCACGACGG CTATGATTTC CCGGCGGCCC GCGACGGCGA AATCATCCGC
GACAGTGTCA CCTCCGGCAT GCCGCAACCG TCGCAGTTCC TGGTGTTCAA CACGCGCCGG
CCGGTGTTCG CCGACATCAA GGTGCGGCGC GCATTGACCC TCCTGTTCGA TTTCGAATGG
ATCAACCGCA ACTACTTCTT CGGCCTCTAC CGGCGGAGCG GCGGCTATTT CGCTGGCTCC
GAGCTCTCGG CCTATGGACG CGCCGCAGAC GCCACGGAGC GCGAGCTCTT GAAGCCGTTC
TCGGCCCGGA TACCGCCCGA CATCATGGAC GGCAGCTACC GCCTGCCGGT GACCGACGGA
TCGGGCCGCG ATCGCACCGC GCTCAAGGCC GCGCTCGATC TCCTGGAAGA GGCCGGCTAC
GGCTTCGACG GCACGGTGCT GCGGCACCGG ACGACCCGGC AGCCGCTCGC GTTCGAGATC
CTTGTCACCA CACGGGACCA GGAACGCATC GCGCTCGCCT ATGCCGGCAG TCTCAAGCGC
GCCGGCATCA ACGCGGCGAT CAGGGTTGTC GACCCCGTGC AATTCGACCA GCGTCGGCTC
AGCTTCGCGT TCGACATGAT CCAGAACAGG TGGGATCAAT CGCTGTCGCC GGGCAACGAG
CAGGCGTTCT ATTGGGGCAG CGAGGCAGCC GACAGGACCG GAACCCGAAA CTACATGGGC
GCCAAGGACC CTGCCATCGA CGCCATGATC GCGGCGCTGT TGCGGGCTCG CGACAGGCCG
GAATTTATCT CGACGGTCCG CGCATTGGAC CGTACCCTGA TGGCTGGCTT CTACGCTATT
CCAGTGCTCA ACGCCGCCGA GGAATGGATT GCGCGGTGGA ATCGGATAGA ACGACCAGAC
AGGACAGCCT TGACGGGAGC GCTCCCGGAA AGCTGGTGGC AGCGGCCGGA GCCGGCAACC
AAATGA
|
|---|
| Protein sequence | MALRRCAVVM ALSLSVHGFA ATASESSAIA MHGSPALPAD FQHLPYVNPQ APKGGRLVWG
LLGTFDSLNP FIVRGVAVQQ IRTHVFESLL TRGNDEPFTL YGLLARTVET DDERTYVTFR
LDPRARFSDG QPVLADDVSF SWNLLREHGR PNHRQFYGKV AKVEVLDPLT IRFDFGGVAD
RELPLILGLM PILPKHATDV ATFEDTSMAA PVGSGPYRVT AVRPGASVTL TRNPDYWGRD
LPINRGLWNF DEIRLDYYRE ANGQFEAFKR GLYDVRVENE PLRWHDGYDF PAARDGEIIR
DSVTSGMPQP SQFLVFNTRR PVFADIKVRR ALTLLFDFEW INRNYFFGLY RRSGGYFAGS
ELSAYGRAAD ATERELLKPF SARIPPDIMD GSYRLPVTDG SGRDRTALKA ALDLLEEAGY
GFDGTVLRHR TTRQPLAFEI LVTTRDQERI ALAYAGSLKR AGINAAIRVV DPVQFDQRRL
SFAFDMIQNR WDQSLSPGNE QAFYWGSEAA DRTGTRNYMG AKDPAIDAMI AALLRARDRP
EFISTVRALD RTLMAGFYAI PVLNAAEEWI ARWNRIERPD RTALTGALPE SWWQRPEPAT
K
|
|---|
| |