| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_4089 |
|---|
| Symbol | |
|---|
| ID | 5154155 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 4286590 |
|---|
| End bp | 4287876 |
|---|
| Gene Length | 1287 bp |
|---|
| Protein Length | 428 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640558922 |
|---|
| Product | putative branched-chain amino acid ABC transporter (substrate-binding protein) |
|---|
| Protein accession | YP_001240061 |
|---|
| Protein GI | 148255476 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.120438 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.0681352 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGGAGACC AAAGTCCCGG TGCCCGTCAG AGGCATAAGG AATCGGGAGG TCTCATGTTT
TCGCTCAAGT CATTCTTGCT TGCGAGCTGC GCGACTGCGC TCATGTCTTC GGCCGCATGG
GCTGCTGATC CGATCAAAAT CGGGGTCATC GCCGAGGCCC AAGCCGTCGC CGGCTCGTCG
ATCGCGCCTG CAGCCCAGCT CGCCGCTGAG GAGATCAACG CCAAGGGCGG TGTCGACGGT
CGCAAGATCG AGATCGTCGT CTACGACAAT CATTCCTCCT CGGCGGAATC GGTGCGTGCG
TTCCAGCGCG CCGTGAGCGA AGACAAGGTC AATGCGGTCA TCGCCAGCTA CATCTCCGAA
GTCGTGCTTG CGCTGGAGCC GTGGGCAGGG CGCCTCAAGA CCCTGATGGT CACGCCGGGT
GCGGCGTCCG ACGTGATCAC CCAGAACATC GCCAAGAACT ACGACCAGCT GAAATACACC
TTCCACGGCT ATCTGACCTC GACCTCGCTG GCCGGACTGG TCTGTGACGC CGCCAAGGAT
CTGCTGGTCG AGCCGTACAA GATGAAGACA GCCGTGATCA TGAGCGAGGA CGCCGCATGG
ACGACGCCGC TCGATGCCGG CTACGAGAAG TGCCTGCCGG AGATCGGATT GAAGGTCGTC
GACCACATCC GGATGTCGCC CGACACCACC GACTTTACGC CGATCTTCAA CAAGATCGAG
GGCCTGAAGC CGGACGTGAT GATTACCGGC ATCTCCCATG TCGGCACCCA GCCGACCGTG
CAATGGAAGA GCCAGCAAGT GCCGATCCCG ATGTTCGGCA TCTCCTCGCA GGCCACCAAC
TCGACGTTCT GGAAGGACAC CAATGGCGCT GTCGAAGGCG TGTTCTACAA TGCCGTGTCG
GGCCCGGGCG TTGCGGTGAC GCCGAAGACG CTGCCCTTCG TCGAGGCCTT TCAGAAGAAG
TTCGGCAACT TCCCGTCCTA TGCCGGCTAC ACGTCCTATG ATGACGTCTA CATGATTGCG
GACGCGATCC ATCGGGCCGG CGGCACCGAT CCCGACAAGA TGGTCGAGGC GATGGAGGCG
ACCGACTATG TCGGTACGAT CGGCCGCATC GCGTTCAAGC CGAAGGGCGA TCCAAACCCG
CACGCGCTGC GCACCGGCAA GGGCTACATC ACCGGTCTCA TGTTGCAATG GCAGAGCGGA
AAGCAGGTCA ATGTCTGGCC GAAGGAGCTC GCGGCCGGCA CGATCACCTG GCCGTCCTTC
ATCAAGCTCA AGGCGGCCAG CAACTGA
|
|---|
| Protein sequence | MGDQSPGARQ RHKESGGLMF SLKSFLLASC ATALMSSAAW AADPIKIGVI AEAQAVAGSS
IAPAAQLAAE EINAKGGVDG RKIEIVVYDN HSSSAESVRA FQRAVSEDKV NAVIASYISE
VVLALEPWAG RLKTLMVTPG AASDVITQNI AKNYDQLKYT FHGYLTSTSL AGLVCDAAKD
LLVEPYKMKT AVIMSEDAAW TTPLDAGYEK CLPEIGLKVV DHIRMSPDTT DFTPIFNKIE
GLKPDVMITG ISHVGTQPTV QWKSQQVPIP MFGISSQATN STFWKDTNGA VEGVFYNAVS
GPGVAVTPKT LPFVEAFQKK FGNFPSYAGY TSYDDVYMIA DAIHRAGGTD PDKMVEAMEA
TDYVGTIGRI AFKPKGDPNP HALRTGKGYI TGLMLQWQSG KQVNVWPKEL AAGTITWPSF
IKLKAASN
|
|---|
| |