| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_4069 |
|---|
| Symbol | ntrB |
|---|
| ID | 5154346 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 4263724 |
|---|
| End bp | 4264911 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640558902 |
|---|
| Product | signal transduction histidine kinase, nitrogen specific, NtrB |
|---|
| Protein accession | YP_001240041 |
|---|
| Protein GI | 148255456 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3852] Signal transduction histidine kinase, nitrogen specific |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.089551 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.329257 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTCAG CCGCAGAACA GCGCAAGCGA CTTCCATCGG ATGGCGACGC CATCCTCAAC
GCCTTGCCGA ATCCGGTCCT CGTCATCGGC CCGGATGGCA TGATCATGGA CGCCAACATG
GCGGCCGAAT CGTTCTTCGA TTCCTCGACC CAGTTTCTGC AGCGGCAATC GCTCAAGAAG
CTGGTGCCGT TCGGCTCGCC GCTGCTGGCG CTGATCGATC AGGTCCGCAC CACGAGCGCG
CCGGTCAACG AGTACAAGGT CGACCTGGGG ACGCCGCGGA CCGGCGCCGA CCGCCTCGTC
GACCTGCATG TCGCTCCGCT TCCCGAACGG CCCGGCGCCA TCGTCGTGAT GCTGCAGGAG
CGCACCATCG CCGACAAGAT GGACCGCCAA CTGACCCATC GCAGCGCCGC GCGCTCGGTG
ATCGCGCTGG CCGCGATGCT CGCGCATGAG ATCAAGAACC CACTGTCGGG CATCCGCGGC
GCCGCGCAGC TCCTTGAGCA ACAGGCCTCC TCCGAGGACC GCATGCTCAC GCGGCTGATC
TGCGACGAGG CCGATCGCAT CGTCACGCTG GTCGACCGCA TGGAGGTGTT CGGCGACGAC
CGGCCGGTGG CGCGCGGACC GGTCAATATC CATTCCGTGC TCGATCACGT GAAGCGGCTG
GCGCAGTCCG GCTTTGCCCG CAACATCCGC TTCATCGAGG ATTACGATCC GTCGCTGCCG
CCGGTGCTCG CCAATCAGGA TCAGCTGATT CAGGTGTTCC TGAACCTGGT CAAGAACGCC
GCGGAAGCGG TCGTCGACCT CGGCGCCGAC GCCGAGATCC AGCTCACCAC CGCGTTCCGC
CCGGGCGTGC GGCTGTCGGT GCCCGGCAAG AAGTCCCGCG TATCGCTGCC GCTGGAGTTC
TGCGTCAAGG ATAACGGCCC CGGCGTGCCG GAAGACCTGA TGCCCAATCT GTTCGATCCG
TTCGTGACCA CCAAGCCGAC CGGAAGCGGC CTCGGTCTTG CATTGGTCGC GAAGATCATC
GGCGACCATG GCGGGATCAT CGAATGCGAG TCGCAGCCGC GCAAGACGAC CTTCCGGGTG
CTGATGCCGA TGTACAGCGC AACCAAACAA CCAGACCAAA GCCCAAAGAA CAGCCATGGC
GATGACGTTT CGGGAACGCC GTTGCATGCC TCACAGGGAT CAAATTGA
|
|---|
| Protein sequence | MSSAAEQRKR LPSDGDAILN ALPNPVLVIG PDGMIMDANM AAESFFDSST QFLQRQSLKK
LVPFGSPLLA LIDQVRTTSA PVNEYKVDLG TPRTGADRLV DLHVAPLPER PGAIVVMLQE
RTIADKMDRQ LTHRSAARSV IALAAMLAHE IKNPLSGIRG AAQLLEQQAS SEDRMLTRLI
CDEADRIVTL VDRMEVFGDD RPVARGPVNI HSVLDHVKRL AQSGFARNIR FIEDYDPSLP
PVLANQDQLI QVFLNLVKNA AEAVVDLGAD AEIQLTTAFR PGVRLSVPGK KSRVSLPLEF
CVKDNGPGVP EDLMPNLFDP FVTTKPTGSG LGLALVAKII GDHGGIIECE SQPRKTTFRV
LMPMYSATKQ PDQSPKNSHG DDVSGTPLHA SQGSN
|
|---|
| |