| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_4068 |
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| Symbol | |
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| ID | 5154345 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | + |
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| Start bp | 4262774 |
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| End bp | 4263727 |
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| Gene Length | 954 bp |
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| Protein Length | 317 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640558901 |
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| Product | putative tRNA-dihydrouridine synthase (nitrogen regulation protein nifR3) |
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| Protein accession | YP_001240040 |
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| Protein GI | 148255455 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.417237 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGGGGA TCACCGACGC GCCGTTCCGC CGACTCGCAG CCGATCTCGG CGCCGGGCTC
GTCGTCTCCG AGATGACCGC GAGCGACGAT CTCGTCAGAG GGCGGTGGAT ATCTCGCTTG
CGCTGCGAAG CCAGCGGCGT CGGGCCGCAT GTGGTTCAGC TGGCCGGCTG CGAGGCGCAT
TGGATGGCCG AGGGTGCCAA GGTCGCCGAG GATGGCGGCG CCGATGTCAT CGACATCAAT
ATGGGCTGCC CGGCGCGCCA CGTCACCGGC GGCCAGTCCG GCTCGGCCCT GATGCGCGAC
CTGGATCATG CGCTCGCGCT GATCGAGGCC ACGGTCGAGG CTGTCGACGT GCCGGTGACC
TTGAAGATGC GCCTCGGCTG GGACGAGCGT AGCCTCAACG CGCCGGAGCT GGCGCGCCGC
GCGGAAGCGG CCGGGGTGCA GTTGATCACG GTGCATGGCC GCACGCGGCA GCAGTTCTAC
AAGGGCGAGG CCGATTGGAG CGCGGTGCGC GCCGTCAAGC AGGCGGTCGA CCTGCCGGTC
GTCGTCAATG GCGACATCAC GAGCTACGAG GATGCGCGCG AGGCGCTCGA CGCCTCCGGC
GCTGACGCCG TCATGATCGG CCGCGGCGCG CAGGGGCAGC CCTGGCTGCC CGGCCAGATC
GGCCGTCGGC TCGACGGCGG CGCGGAAGAG GGCGCGCCCG CGCTGTCACA GCAGCTCGCT
TATTTGACGG CCCTCTATGA CGAGATCTGC CGCCACTATG GCGAGCGTGT CGGCCTGCGC
CACGCCCGCA AACATCTCAG CTGGGGGCTG GACGTGGCTG CCCGGCACGC CAAGGCGCCG
GCTGAAAAAC TGAAGGCCTG GCGCGAGCGT ATCCTGACGT CGGAGCAGCC GGCTCTGGTG
CAGGGGGCGC TGCGAGACGC GTTCGACGAT TTTGCCTGGA GTGCAGCCGC ATGA
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| Protein sequence | MSGITDAPFR RLAADLGAGL VVSEMTASDD LVRGRWISRL RCEASGVGPH VVQLAGCEAH
WMAEGAKVAE DGGADVIDIN MGCPARHVTG GQSGSALMRD LDHALALIEA TVEAVDVPVT
LKMRLGWDER SLNAPELARR AEAAGVQLIT VHGRTRQQFY KGEADWSAVR AVKQAVDLPV
VVNGDITSYE DAREALDASG ADAVMIGRGA QGQPWLPGQI GRRLDGGAEE GAPALSQQLA
YLTALYDEIC RHYGERVGLR HARKHLSWGL DVAARHAKAP AEKLKAWRER ILTSEQPALV
QGALRDAFDD FAWSAAA
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