| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_4040 |
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| Symbol | |
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| ID | 5152498 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | - |
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| Start bp | 4239009 |
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| End bp | 4240244 |
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| Gene Length | 1236 bp |
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| Protein Length | 411 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640558873 |
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| Product | putative lipoprotein-releasing system transmembrane protein (lolC) |
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| Protein accession | YP_001240012 |
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| Protein GI | 148255427 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.0498435 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCTGG TCCTCACCAT CGCCTGGACC CATGTGCGTC ATCGCGCTCG GCAGACGCTG
GTCGCGATCG CCGGGGTGAT GACCGGCGTG GCGTTCTCGG TGATGATGGC GGCCATGATG
GAGGGATCCC AGGACGATTT CATCCGCACC CTGGTCGACG CGCTGCCGCA CATCTCGATC
ACCGACGAGC TGCGCGAGCC GAGCCGTCAA CCGGCCGATC AGATCTATGC GGCCGCCGAA
TTCCACGGCC TGAAGCCGAA TGTGCGGCGC CCCGGCATCA AGAACCCGAT GGCGACGATC
GCCTCACTGC AGGGCTGGGT GCCCGGTGCA CTGACGGCGT CCGTGCAATC CAAGGCGGTG
TTGCGCTTCG CCGGCCGCAA TCTCACCGTC GCGATCATCG GCATCGACCC GCGCACCGAA
AACGAGGTCT CGACCCTTGC CAGCCATATG CGCCAGGGCA GCCTCAATTC GCTGTATCGC
TCGTCGCACG CAATCCTGCT CGGCGACCGG CTCGCGGCCA AGCTCGGGGC GCGCGTGAAC
TCCAACATCA CGCTCGCCTC CGCCCAGGGC ATCAGCATGA ACGCCACGGT CGTCGGCACC
TTTCACTCCG GCTTCCGCGC CACCGACGAG ACCACCGGCT ATGTGCTGCT GCGCACCGCG
CAGATCCTCG AGCGCCAGAC CGGCATCATC AACGAGATCC GCATCCGGAC CAACGATCCG
ATGCAGGCCC GGCTGATCAG CGAACGGATC GGGGAACAGA CCGGCTACAA GGCGATCTCC
TGGCAGGAGG CGCAGGAGGA TCTGCTGTCG GCGATCACGC TGCGCAACGT GCTGATGTAC
ACGATCGTCG GCGCCATCCT GCTGGTCGCG AGCTTCGGCA CCTACAACAT CATCTCGACG
ATCACGCATG AGAAGACCCG CGACATCGCG ATCCTGAAAT CGCTCGGCTT TCGCGACCGG
ACCATCCGCA GCATCTTCAT CATCGAGGCG CTGTTCATCG GTCTGACCGG CGCGGCCTTC
GGCTGGGTGC TCGGCTATCT CCTGACTCGC GGGCTTGCCT CGCTCGAGTT CAAGACGCCG
TTCTCCGACT ACAATCACCT GCCCGTCTTG TATTCGTTGA AGCACTATCT GCTCGCCACC
GCCGTGGCGC TGCTGTCGAG CGTGGTGGCC GGCTACTTCC CGGCCCGCGC CGCGGCGCGG
CTGCATCCCG TCGATATCAT CCGGGGTGCG ACGTGA
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| Protein sequence | MSLVLTIAWT HVRHRARQTL VAIAGVMTGV AFSVMMAAMM EGSQDDFIRT LVDALPHISI
TDELREPSRQ PADQIYAAAE FHGLKPNVRR PGIKNPMATI ASLQGWVPGA LTASVQSKAV
LRFAGRNLTV AIIGIDPRTE NEVSTLASHM RQGSLNSLYR SSHAILLGDR LAAKLGARVN
SNITLASAQG ISMNATVVGT FHSGFRATDE TTGYVLLRTA QILERQTGII NEIRIRTNDP
MQARLISERI GEQTGYKAIS WQEAQEDLLS AITLRNVLMY TIVGAILLVA SFGTYNIIST
ITHEKTRDIA ILKSLGFRDR TIRSIFIIEA LFIGLTGAAF GWVLGYLLTR GLASLEFKTP
FSDYNHLPVL YSLKHYLLAT AVALLSSVVA GYFPARAAAR LHPVDIIRGA T
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