Gene BBta_3955 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBBta_3955 
Symbol 
ID5151541 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBradyrhizobium sp. BTAi1 
KingdomBacteria 
Replicon accessionNC_009485 
Strand
Start bp4155682 
End bp4157043 
Gene Length1362 bp 
Protein Length453 aa 
Translation table11 
GC content68% 
IMG OID640558790 
Productputative metalloendopeptidase 
Protein accessionYP_001239931 
Protein GI148255346 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0739] Membrane proteins related to metalloendopeptidases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.862096 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGCATC GTTCCGGCCA GTACGCCGAA TATCCCCAGC ACCATTCGCA TGACCGCGGG 
CGCGCCGTGC AGCAGCGGCG CTCTCCGGTC GGTCACCCTG CCCCCGCTCC GGCCACCTCG
CAGAGCGACT ACACGCTGGT GCATGCCGGC CGCCAGGTCC GAATCGGCCC GGTCGTGTTC
TGGATCGTCG TCGGCACCGT CAGCCTGCTC GGCCTGTGGT CGGCGGCGAC CGCCACCTAT
TTCGCATTCC GCGACGACGT GCTGACGCGC CTGATCGCCC GTCAGGCCGA GATGCAATAC
GCCTATGAGG ATCGGATCGC GGAGCTGCGC GCCAAGGTCG ATCGCGCCAC CAGCCGTCAA
TTGCTCGACC AGGAGCAGTT CGACCAGAAG CTCGACCAGA TCCTGAAGCG CCAGACCGCG
CTCGAGGGCC GCGCCACCGC GCTGGGCAGC ATTCCCGATG TGACCGGCGC GATCCGTCCG
CCGGCGCGCG GCCCCGCGAT CGAGCCGTCC GCCGCGCCGG CCACGCCGAA GCCGTCGCCG
ATCAGCGATA CCGTGATCTT CACGGCGCCG CCAGACCGTG AGGCGCGGCT GGAATCGCGC
AGCCCCGTGC TGGCGAACGT GCAACCGAAC CAGGCGACCA AGCTCGCCGG CGTCGACAAT
GTGCTGACGC GGCTGACGCG CTCGCTCGAC CAGGTCGAAG CGCGGCAGCT GGCAATGCTG
TCGTCGGCGG AAGAGACGCT CGAATCGAAG CTGCGCCGGA TGCGCGGCGT GATCACCGAT
CTCGGCCTCG ACATGGGCCA GCTCGAAGCT GCGGCCCCGA AGGGCGCGAT GGGCGGCCCC
TTCGTGCCGG TAAAGCTCGG CGCCGAATCC GGCCCGTTCG AGCGCCAGCT CTATCGCATC
AACATCACCC GCGCGCAGGT CGAGAAGATG AACCGCACGC TGTCGCTGGT GCCCTATCGC
AAGCCGGTCA TCGGAGAGGT CGAGTTCACC TCCGGATTTG GCGTGCGCTC CGATCCGTTC
CTCGGCCGGC CCGCGATGCA CACGGGCCTC GATTTCCGTG CAGCCACAGG CGATCCGGTC
CGCGTCACCG CCAATGGAAA GGTGGTCAAT GCTGGCTGGT CAGGCGGCTA TGGCCGCATG
GTCGAGGTCG ATCATGGCAA CGGCCTGTCC ACCCGTTATG GCCATCTCTC CGAGATCAAC
GTCAAGATCG GCCAGCAGGT GAAGATCGGC GACATCATCG GTGAGGTCGG CTCGACCGGC
CGCTCGACCG GCCCGCATCT GCACTACGAA ACGCGCATCG ACGGCGAGGC GGTCGACCCG
CAGAAATTCC TGCGCGCCGG CGTGCGGCTC AGCGCCGGTT GA
 
Protein sequence
MSHRSGQYAE YPQHHSHDRG RAVQQRRSPV GHPAPAPATS QSDYTLVHAG RQVRIGPVVF 
WIVVGTVSLL GLWSAATATY FAFRDDVLTR LIARQAEMQY AYEDRIAELR AKVDRATSRQ
LLDQEQFDQK LDQILKRQTA LEGRATALGS IPDVTGAIRP PARGPAIEPS AAPATPKPSP
ISDTVIFTAP PDREARLESR SPVLANVQPN QATKLAGVDN VLTRLTRSLD QVEARQLAML
SSAEETLESK LRRMRGVITD LGLDMGQLEA AAPKGAMGGP FVPVKLGAES GPFERQLYRI
NITRAQVEKM NRTLSLVPYR KPVIGEVEFT SGFGVRSDPF LGRPAMHTGL DFRAATGDPV
RVTANGKVVN AGWSGGYGRM VEVDHGNGLS TRYGHLSEIN VKIGQQVKIG DIIGEVGSTG
RSTGPHLHYE TRIDGEAVDP QKFLRAGVRL SAG