| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_3934 |
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| Symbol | mdtC |
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| ID | 5151112 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | + |
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| Start bp | 4127003 |
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| End bp | 4130110 |
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| Gene Length | 3108 bp |
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| Protein Length | 1035 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640558767 |
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| Product | multidrug ABC transporter |
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| Protein accession | YP_001239910 |
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| Protein GI | 148255325 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.962709 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCTTCT CGATCTCCGA GCCGTTCATT CGCCGGCCGG TCGGCACCAC GCTGCTCTCG
ATCGGACTGT TCCTGGTCGG GATCGTCGCC TACATCTTCC TGCCCGTGGC GCCGGTGCCG
AACGTCGACT TCCCCTCGAT CTTCGTCACG GCCACGCGCC CGGGCGCCGA TCCCTCGGTC
ATGGCGGGCA CCGTCGCGGC ACCGCTGGAG CGGCGGCTCG GCGAGATCGC CGGCGTCGAC
CAGATCACAT CCACCAGCTC GCTCGGCACC ACCAATATCC AGATCCAGTT CTCGATCGGC
CGCGACATCG ACAAGGCCGC GCGTGACGTG CAGGCCGCGA TCAACGCCTC GCTGTCGGAC
CTGCCGAGTG ATCTGCCGGC GCTGCCGCGC TTCCGCAAAG CCAATACGGC TGCGGCACCG
GTGTTCGTGC TGGCGCTGAC CTCGAAGACG TTGACGCCGA GCGCGATGTA CGACGTCGCC
GATACGGTGC TGGCGCAGCG GCTGTTCCAG GTGCCAGGCG TCGGCAACGT CACCGTCAGC
GGCGCCGACC AGCCGGCGGT GCGGATCGCG CTCAATCCGG TCTCGCTCGC CAATGCGGGA
ATCTCGACCG ACGACGTCAG GACCGCGATC ATCAATGCCA ACCCGATCGG GCCGGTCGGC
ATCTTCGAGG GGGGGCGGCA GAGCGAGACC ATCGCCATCA ACCGGCAGAT GCGGACCGCG
GCCGAATTCC GTGACATCCT GATCAAGAGC AGCAATGGCA GCTTCGTCCG GCTGTCGGAT
GTCGCCGACG TCGAGGATTC CGTGCGCAAT GTGCGCTCGA TCGCCTGGTT CAACAAGCAG
CCGGCGGTGC TGATCCAGAT CGCCAAGCAG GGTGACGCCA ACGTCATCGA GACCGTCGAC
CGGGTGAAGG CGCTGATCCC CGAGCTCAAG CAGTGGTTGC CCGCGGGCAT AGAGATCTCG
ACCCTGATCG ATCGCACCGG CACGATCCGC GCCTCGGTCG AAGACATGCA ATGGACCTTG
CTGGCGACCG CCGTGCTGGT GATGGTCGTG GTGTTCCTGT TCCTGCGTCG TCTCGTGCCG
ACGGTGGCGG CCGGCGTCTC GGTGCCGCTG GCGCTGGCCG GCACCTGCGC GGCGATGTGG
CTCGCCGGCT TCTCGATTGA CAATCTCTCG CTGATGGCGC TCGCGATCTC GGTCGGCTTC
GTCGTCGACG ACGCCATCGT CATGATCGAG AACATGTACC GCAATCTCGA GCACGGCCTG
CCGCCGATGC GCGCCGCGCT CGACGGCGCG CGCCAGATCG GCTTCACCGT GCTGTCGATC
AGCCTGTCGC TGATTGCGGC CTTCGTGCCG CTGATCTTCA TGGACGGTGT CGTCGGCCGC
CTGCTGCGCG AGTTCTCGCT GACGCTGACC TTTGCGATCG TGGTGTCGAC CCTGGTGTCG
CTGACCGTCA CGCCGATGAT CTGTGCGCAC TACATCAAGG AGACGCTGTC CGACCGCGCC
AGCTGGTTCG ACCGCATCGT CGAGGGCTCG CTGTCGGGCA TGGTCCGCTT CTATGCCTGG
ACCTTGCGCG GCGTGCTGGT CTACCCGTTT CTGACTCTGA TGGTGTTCTT CGCCACCATC
GCGCTGACGG TCACGCTCTA CATCAAGGTG CCCAAGGGCT ACTTCCCGAC CGACGATTCC
GGCTTCATCA TCGGCGCGAC CCGCGCCTCC GCCGACATCT CGTTCCAGTC GATGCTGAGC
CTGCAGCAGC GGCTCGCCGA CATCGTGATG GCCGATCCGG CCGTCGCAGG GATCGGCTCG
ACCATCGGCG GCGGTGGCGG GCCGGGCGGC GCGACGTCGA ACCGCGGCAC GATGTTCATC
AATCTCAAGC CGCCGGCGGA GCGGGACGGT GTCTCGACCG AGCTCGTGAT CAACCGTCTG
AGGCGCAGCC TCGCGATGGT GCCGGGCATC CGTCTCTTCA TGTTCGCCGC ACAGGATGTC
CGCGCCGGCG GCCGGCAGAG CGATTCCGAC TATCAGTACA CGCTGAGCAG TCCCGATCTC
GATCTGCTGC AGAAATGGGC GCCGATCGTC GCCAAGCGGC TGGAGACGGT GGAAGGCATC
ACCGACATTT CCAGCGACCG CGACCCCGGC GGCCTGCAGC TGGCGCTCCG GATCGACCGG
CAGAAGGCGG CGAGCCTTGG CGTGCGCGTC CAGGACATCG ACACCGCCCT GAACAACGCC
TTTGCGCAGC GCCAGATCTC GATCGTCTAC AGCCAGCGCA ACCAGTACAT GGTGGTGCTG
GAGATCGATC CGAAATTCCA GACCGATCCG TCGAACCTCG ATCGGATCTA TGTGGCGGGG
GCAGGGGACG CGCAGATTCC GCTCTCGGCG CTGGTGAAGG CCGAGCGAGG CCTGTCGCCG
CTCGCGGTGT TTCACTCGCA GTCGTTCCCC TCCACCACCG TGTCGTTCAA CCTGCTGCCC
GACGTGCCGC TGCAGGCCGC GACCGCGAAC ATCCAGCGGG CGGTGGACGA GTTGCATATG
CCGGAAGGCA TCCGCGGCGG CTTCGACGGC AATGCCGGCG ACTTCAACAA GGGCAGCGGC
CGGCAGCCGC TGCTGATCCT GTCCGCGCTG GTCGCGATGT ATATCGTGCT CGGCGTGCTC
TATGAGAGCC TGGCGCATCC GCTGACCATC ATCTCGACCT TGCCATCGGC GGGGCTCGGC
GCGCTGCTCG CTTTGCAGGT CACCAATACG CCGCTGACCG TGATCGCCTT CGTCGGCATC
ATCCTCTTGA TCGGCATCGT CAAGAAGAAC GGCATCATGC TGGTCGACTT CGCGCTCGAG
GCCGAGCGGC AGCGCGGCAT GTCGTCGGCC GATGCGATCT TCGAGGCCTG CCGGGTGCGC
TTCCGTCCGA TCCTGATGAC GACCTTGGCC GCGCTGTTCG CCGGCCTGCC GCTGGTGCTC
GCGACCGGGC CAGGGACCGA GCTGCGCCGG CCGCTCGGCA TCACCATCAT CGGCGGCCTG
CTGGTGTCGC AGATCCTGAC GCTCTACACG ACGCCGGTCA TCTATCTCCT GATCGACCGG
CTGCGCCGCC GCTCGGCGCC GGAGCCGCTC GCCGCGCCGG CAGAATGA
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| Protein sequence | MAFSISEPFI RRPVGTTLLS IGLFLVGIVA YIFLPVAPVP NVDFPSIFVT ATRPGADPSV
MAGTVAAPLE RRLGEIAGVD QITSTSSLGT TNIQIQFSIG RDIDKAARDV QAAINASLSD
LPSDLPALPR FRKANTAAAP VFVLALTSKT LTPSAMYDVA DTVLAQRLFQ VPGVGNVTVS
GADQPAVRIA LNPVSLANAG ISTDDVRTAI INANPIGPVG IFEGGRQSET IAINRQMRTA
AEFRDILIKS SNGSFVRLSD VADVEDSVRN VRSIAWFNKQ PAVLIQIAKQ GDANVIETVD
RVKALIPELK QWLPAGIEIS TLIDRTGTIR ASVEDMQWTL LATAVLVMVV VFLFLRRLVP
TVAAGVSVPL ALAGTCAAMW LAGFSIDNLS LMALAISVGF VVDDAIVMIE NMYRNLEHGL
PPMRAALDGA RQIGFTVLSI SLSLIAAFVP LIFMDGVVGR LLREFSLTLT FAIVVSTLVS
LTVTPMICAH YIKETLSDRA SWFDRIVEGS LSGMVRFYAW TLRGVLVYPF LTLMVFFATI
ALTVTLYIKV PKGYFPTDDS GFIIGATRAS ADISFQSMLS LQQRLADIVM ADPAVAGIGS
TIGGGGGPGG ATSNRGTMFI NLKPPAERDG VSTELVINRL RRSLAMVPGI RLFMFAAQDV
RAGGRQSDSD YQYTLSSPDL DLLQKWAPIV AKRLETVEGI TDISSDRDPG GLQLALRIDR
QKAASLGVRV QDIDTALNNA FAQRQISIVY SQRNQYMVVL EIDPKFQTDP SNLDRIYVAG
AGDAQIPLSA LVKAERGLSP LAVFHSQSFP STTVSFNLLP DVPLQAATAN IQRAVDELHM
PEGIRGGFDG NAGDFNKGSG RQPLLILSAL VAMYIVLGVL YESLAHPLTI ISTLPSAGLG
ALLALQVTNT PLTVIAFVGI ILLIGIVKKN GIMLVDFALE AERQRGMSSA DAIFEACRVR
FRPILMTTLA ALFAGLPLVL ATGPGTELRR PLGITIIGGL LVSQILTLYT TPVIYLLIDR
LRRRSAPEPL AAPAE
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