| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_3933 |
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| Symbol | mdtB |
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| ID | 5151111 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | + |
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| Start bp | 4123875 |
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| End bp | 4127003 |
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| Gene Length | 3129 bp |
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| Protein Length | 1042 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640558766 |
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| Product | multidrug resistance protein mdtB |
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| Protein accession | YP_001239909 |
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| Protein GI | 148255324 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.906804 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGTCT CCGAACCCTT CATTCGCCGC CCGATCGCGA CCTCGCTGCT CGGCGTCGCG
CTTTTGATCG GCGGCCTGCT CGGCTATCTC GCGCTGCCGG TCTCGGCGCT GCCACAGGTC
GACTTTCCCA CGGTGCAGGT GACCACGCAG CTGCCGGGCG CCAGCCCCGA CGTGATCGCC
GCGCTGATCA CCGCGCCGTT GGAGCGGCAG CTCGGTCAGA TCCCGTCGCT GGCGGCGATG
AATTCGACAA GCTCGTTCGG CGTCAGCCAG ATCTCGCTGC AGTTCGACCT CGGGCGCGAT
ATCGACGGCG CCACGCAGGA CGTGCAGGCG GCGATCAATG CCGCGGCCGG CGTGCTGCCG
AAATCGCTGC CTTATCCGCC GACCTACGCC AAGGTCAATC CGGCCGACGC GCCGGTGATC
ACGCTCGCGC TGACCTCGGA TACCGTCTCG CTGCGGGCGA TGAGCGACAT GGCTGATACG
ATCCTGGCCC AGCGTCTCAG CCAGGTCTCC GGCGTCGGCC GCGTCTCGGT GCTCGGCGGA
TTGAAGCCCG CGGTGCGTGT GCAGGCCGAT CTGGCGCGGC TTGCTGCCTA TGGCATTTCG
ATGGAGGACC TGCGCGCCGC CATTGCCGGC GCCAACGTCT CCGGACCGAA GGGATCGTTG
GATGGCGCGC AGCAGGCCTA TCTGATCACA GCCAATGATC AGATCGCCGC TGCAGACGCC
TACCGGCCGA TCATCATCGC CTACCGCAAC GGCTCACCGG TGACGATCGG CGACGTCGCC
ACCATTGTTG ACGGGCTCGA GAACGATCGG ACTGGCGGCT GGTACCAGGG CGTGCCGGCC
GTGATCCTCG ATATCCAGCG TCAGCCCGGC GCCAATGTGA TCGAGGTCGT CAGGCAGATC
CGCGCCGAGA TCCCCAAGCT GCAGCGTACG ATTCCGGCCG GCGTGAAGCT CGCCATCGTC
AGCGACCGCA CGGTGACCAT TCGCGCCTCG GTGCATGACG TGCAGTTCAC GCTGGTGCTC
AGCGTGGTGC TGGTCACGCT GGTCGTGCTC CTGTTCCTGC GCTCGCTGCG CGCCACGATC
ATTGCCGGCG TGGCGCTGCC GCTGTCGCTG ATCACGAGCT TCGGCGTGAT GTATTTCGCC
GGCTTCAGCC TCGACAATCT GTCGCTGATG GCGCTGACCA TCGGCACCGG CTTCGTCGTC
GACGACGCCA TCGTGATGAT CGAGAACATC GTCCGCCATA TGGAGAACGG TGAGAGCGCG
ATGAACGCCT CGCTGCGTGG CGCCCGTGAG ATCGGCTTCA CGGTGATCTC GCTGACGGTG
TCGCTGATCG CGGTGTTCAT TCCGCTGTTG TTCATGTCTG GCCTGGTCGG CCGCATGTTC
CGCGAATTCG CGCTGACCTT GACGATCGCG GTCGTGACCT CTGCGGTCGT GTCGCTGACC
CTGACGCCGA TGATGTGCTC GCGGCTGCTG AAGCACGCCA GCGATGAATG GGTGCTGCCG
GGGCTGAACG CGATCAGCCG CTTCATCGAC CGCACGGTTG CCGTCTATCA CCGCAGCCTG
CTCTGGGTGC TCGACCGCCA GACCGAAACG CTGGTCGTCA CCTTCGCGAC GCTGGCAGCG
ACCCTGGCGC TCTACGTCGT CGCGCCCAAG GGATTTCTGC CGCTGCAGGA CACCGGCTCG
ATCACGGCGG TGACGGAGGC GGGCCCGGAC GTCTCGTTCG CCGAGATGCA GCGACGGCAG
CAGGAGGTGG CGGCGGCGAT CCAGGCGGAC CCGGACGTGG TGGGCGTCGT CTCGGTGATC
GGGGCCGGAT CGGTCAACCC GACCACCAAC GTCGGACGCC TCGTGATGAC CTTGAAGCCG
CTCGGCGAGC GGCAGGACGG CGTCGCCGCG GTGATCGACC GGCTGAAGCA GAAGACAGCC
GGAGTGCCGG GCATGACCGT GTACTTCCAG CCGGTCCAGG ACGTGCAGAT CTCGACCCAG
GCGAGCCGCT CGCAATATCA GTACACGCTG ACCGGCGCCG ATGCCGGCGA CGTCGCGAAA
TGGGCTGGAC AGCTGGTGGC AGAGATGCGG CGCGACCCGC TGTTCCGCGA CGTCTCATCG
GAAGCCCAGG AGGGCGGGCT GCGCGCCGAA CTGACCATCG ACCGCCAGCG CGCCGGCCAA
CTTGGCGTCA GCCTGCAAGG CGTCACCGAC ACGCTCAACG ATGCGTTTGC GCAGCGCCAG
ATCTCGACCA TCTACGGCCA GGCCAACCAG TACCGCGTGG TGCTGGAGGC GATGCCGATG
TATCAGCGCG ACCCTTCCAT CCTGTCGAAG CTGTACCTGC CGGGCGCGGG CGGCCAGGTG
CCGCTGTCGG CGGTGGCAAG TCTGAAGCGC ACCACGGCGC CGCTGGCGAT TTCGCATCAG
GCGCAATTCC CGGCCGTGCA GCTGAGCTTC AACCTCGCGC CCGGCGTGGC GCTGAGCGAG
GCGGTCGACG CGCTTCACGC CACCGAGAAC CGCATCGGCA TGCCCGGCAG CATCATCGGC
GTCTACTCCG GCGATGCCGC CGAATTCGCC AAGTCGCTCG CCGGTCAGCC CTGGCTGCTG
CTGGCGGCTG TCATCACGAT CTATATCGTG CTGGGCGTGC TGTATGAGAG CTACATTCAT
CCGATCACGA TCCTCTCGAC CTTGCCGTCG GCTGGCGTCG GCGCCATCCT CGCCTTGATG
CTGTTCGGCC AGGATCTCTC GGTCATCGGC CTGATCGGCA TCATCCTGCT GATGGGCATC
GTCAAGAAGA ACGCGATCAT GATGATCGAC TTCGCGCTGG AGGCTGAACG GCACGAGAAC
CGCACGCCGT ATGATGCCAT CGTGCAGGCG TGCCTGTTGC GCTTCCGTCC GATCATGATG
ACGACGCTGG CCGCGCTATT CGGCGCGCTG CCGCTGGCGA TCGAGAGCGG CACCGGCTCG
GAGCTGCGCT TTCCGCTCGG CATCTCCATC ATCGGTGGCC TGCTGCTGAG CCAGTTGCTG
ACGCTGTACA CGACTCCGGT GATCTATCTG GCGCTCGACC GCCTCAACCG CCGCTTCGAG
ACGGCGCTGC CGCCGGCGCC CGACCTGCCG TCGCCGCCGA TCGCGGGCGC CACCGAAGGC
ATCCAGTGA
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| Protein sequence | MSVSEPFIRR PIATSLLGVA LLIGGLLGYL ALPVSALPQV DFPTVQVTTQ LPGASPDVIA
ALITAPLERQ LGQIPSLAAM NSTSSFGVSQ ISLQFDLGRD IDGATQDVQA AINAAAGVLP
KSLPYPPTYA KVNPADAPVI TLALTSDTVS LRAMSDMADT ILAQRLSQVS GVGRVSVLGG
LKPAVRVQAD LARLAAYGIS MEDLRAAIAG ANVSGPKGSL DGAQQAYLIT ANDQIAAADA
YRPIIIAYRN GSPVTIGDVA TIVDGLENDR TGGWYQGVPA VILDIQRQPG ANVIEVVRQI
RAEIPKLQRT IPAGVKLAIV SDRTVTIRAS VHDVQFTLVL SVVLVTLVVL LFLRSLRATI
IAGVALPLSL ITSFGVMYFA GFSLDNLSLM ALTIGTGFVV DDAIVMIENI VRHMENGESA
MNASLRGARE IGFTVISLTV SLIAVFIPLL FMSGLVGRMF REFALTLTIA VVTSAVVSLT
LTPMMCSRLL KHASDEWVLP GLNAISRFID RTVAVYHRSL LWVLDRQTET LVVTFATLAA
TLALYVVAPK GFLPLQDTGS ITAVTEAGPD VSFAEMQRRQ QEVAAAIQAD PDVVGVVSVI
GAGSVNPTTN VGRLVMTLKP LGERQDGVAA VIDRLKQKTA GVPGMTVYFQ PVQDVQISTQ
ASRSQYQYTL TGADAGDVAK WAGQLVAEMR RDPLFRDVSS EAQEGGLRAE LTIDRQRAGQ
LGVSLQGVTD TLNDAFAQRQ ISTIYGQANQ YRVVLEAMPM YQRDPSILSK LYLPGAGGQV
PLSAVASLKR TTAPLAISHQ AQFPAVQLSF NLAPGVALSE AVDALHATEN RIGMPGSIIG
VYSGDAAEFA KSLAGQPWLL LAAVITIYIV LGVLYESYIH PITILSTLPS AGVGAILALM
LFGQDLSVIG LIGIILLMGI VKKNAIMMID FALEAERHEN RTPYDAIVQA CLLRFRPIMM
TTLAALFGAL PLAIESGTGS ELRFPLGISI IGGLLLSQLL TLYTTPVIYL ALDRLNRRFE
TALPPAPDLP SPPIAGATEG IQ
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