| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_3886 |
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| Symbol | |
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| ID | 5149529 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | - |
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| Start bp | 4072229 |
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| End bp | 4073572 |
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| Gene Length | 1344 bp |
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| Protein Length | 447 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640558720 |
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| Product | putative RTX secretion protein D |
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| Protein accession | YP_001239864 |
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| Protein GI | 148255279 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.652406 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.810853 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGATGG CACTGGTGCA GGACAACAGC TTTGAACTGC CCGGCCGGCC GCAGCCGGTC
AAAGCCGATT TTGGCCGTTA CGCCCTGCTC GGCTACATCT CGATCGCGCT CGTATTTGGC
GGATTTGGTG TGTGGTCGGC CTATGCGCCG CTCGACCGCG CGGCAATTGC GCCGGGCACG
GTGTCCGTCT CCGGCGATCA CAAGGTGGTC CAGCACCGCG AAGGTGGCAT CGTCAGGGAG
ATCCTGGCCA AAGAAACCCG CGAGGTGCGC CGCGGCGACC TGCTGTTCCG GCTGCAGCCG
ACCGAGGCGC AGGCCAACAC CGATCTCCTG CGCAAGCAGA TGGACGCCGC ACTCGCCGAG
GAAGCGCGCC TGCTCGCCGA GCGCGGCAAT GCACGGATGA TCACCTTCCC GGACAGTCTG
CTCAATCGGC AAAACGTTCC GGAAGCAGCG CTCGCCATCG CCGATCAGCA GCGGCTGTTC
ATCGAGCGCC GCAATGGCCT GATCAGCCAG ATCAACATCC TGAACTCGCA GATCGTCCAG
CAGCAGCAGG AGCTCGCCGG CCGCGACAGG CAGCGCGCCG CGCTGGGGGC GCAACTGGCG
AGCTTCGATA CGCAGATGAA CAATGTCAGG CCTGCCGTCG CGCAGGGCTA TTATCCCCGC
AACAAGTTCC TGGAGCTGGA GCGCGACCGC GCCCGTGTCG AGGGTGATCT CGGCCAGGCC
CAGGCCGACG TGGCACGGCT GACGCAGACG GCGGCGCAAA CGCGCCTGCA GATCGATCAG
GCGCTGCAGA AATACCAGAC GGAGGTCGGC CAGCAGCTCG ACGGCACCCG AGCCAAATTG
TCGGATCTGC GCGAGAAGCT CGTCATTGCC GAGGACGTGC TGCGCCGTGT CGACATCCGC
GCCGAGCGCG ACGGTATCGT CATGAACATG AAGGTTCACA CGGTTGGCGC CGTGGTGAAG
CCGGGCGATA CGCTGGCAGA GATCGTGCCG ATCGGCGAAG GCGTCGACGT GATGGCGCAT
GTCTCGCCGC GCGATATCGA GAGCGTCGCG GTCGGACAGA AGGCTGAAGT CCGCTTCCCG
AACTTCTCCT CACGCACGAC GCCGACGATC TTCGGCAAGG TCCAGAGCGT TTCGGCTGAC
GCAATATCCG ACGAGGCGAC CAAGCAGAGC TATTACTCCG CACGGGTCGT GATCGACTAT
TCGACCCTTC CGCCGGAGAT CGCCAGCAAG ATCATGCCGG GCATGCAGGC CGACGTGATC
ATCTCCACGG GTGAACGCAC CGTGCTCGAA TATCTCGTCG GCCCCCTGCT CAACACCCTG
GCCAAGACCT TCCGGGAGAA ATGA
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| Protein sequence | MSMALVQDNS FELPGRPQPV KADFGRYALL GYISIALVFG GFGVWSAYAP LDRAAIAPGT
VSVSGDHKVV QHREGGIVRE ILAKETREVR RGDLLFRLQP TEAQANTDLL RKQMDAALAE
EARLLAERGN ARMITFPDSL LNRQNVPEAA LAIADQQRLF IERRNGLISQ INILNSQIVQ
QQQELAGRDR QRAALGAQLA SFDTQMNNVR PAVAQGYYPR NKFLELERDR ARVEGDLGQA
QADVARLTQT AAQTRLQIDQ ALQKYQTEVG QQLDGTRAKL SDLREKLVIA EDVLRRVDIR
AERDGIVMNM KVHTVGAVVK PGDTLAEIVP IGEGVDVMAH VSPRDIESVA VGQKAEVRFP
NFSSRTTPTI FGKVQSVSAD AISDEATKQS YYSARVVIDY STLPPEIASK IMPGMQADVI
ISTGERTVLE YLVGPLLNTL AKTFREK
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