Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BBta_3885 |
Symbol | |
ID | 5149528 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bradyrhizobium sp. BTAi1 |
Kingdom | Bacteria |
Replicon accession | NC_009485 |
Strand | - |
Start bp | 4070268 |
End bp | 4071989 |
Gene Length | 1722 bp |
Protein Length | 573 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640558719 |
Product | putative toxin/protease secretion system |
Protein accession | YP_001239863 |
Protein GI | 148255278 |
COG category | [R] General function prediction only |
COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.557144 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACGACGA CCACCGCCCG CAGCCCGCTC GGAACCGCAC TGCGGGCCTG CTTTCCCGCG CTCACCGCGA CCTTCGTTCT CAGCCTCTTC ATCAATGCGA GCATGCTGGC TTCGCCGCTC TATTCGATGC AGGTGTATGA CCGCGTGCTC ACCAGCCGCA ATCTTGGCAC GCTGGTGATG CTGACCCTGA TCGTCGGCGT TTTCCTGGTG TTGTACGGCA TCCTCGAATT TGCCCGCTCC GGGGTGCTGG CGCGCGCCGG CGTCCAGTTC GAAGGCACCC TGCGCCACCC TCTGTTCGAA ACGATGATGA AGGCTGAGCT GTCACCGCGG CATCGCTTTG GACAGCAGAT CATCCGCGAC GCCGAGACCA TCCGCGACTG CATCTCGAGC GGCACCGCGG CTATCGCCTG CGACCTGCCC TGGACACCGG TGTTCGTGGC GCTGTGTTTC CTGCAGCACG CCTATCTCGG CATTCTCTCG CTGTTGGGAG CGGTCGTCTT GTTCTCGCTG GCGCTGTTGA CCGAGTTTTA CACGCGCTCC AGCGTTGAGC GCACCAACGC GCTGGCCAAC GAGGCCTCGC GCTTCGTGGC AGCGGCACTG CGCAATGGCG AGGTCGTGCG CGGCCTCGGC ATGGGCGACA TCGTCATGGA TCGCTGGAGC TGCCGGCAGT CGGCCATGGT CGATGCCCAC AGCACGCTGG TCGAGCGCGG CGCCGCGATG CACTCGATCA CCAAATTCGC CCGCATGGCC GTGCAGACGT CGCTGCTCTG CATCGGCGCC TGGCTCGCGA TCGAGCAGCA GATCTCTCCC GGCGCCATGA TGGCGACATC GATCATCATG GGCCGCGCGC TGGCGCCGGT TGAACAGGTC GTCGGCCAGT GGAAGCGGAT CATCGCCTTC CGCTCCGCCT ATCGCCGACT CGAAGAGCTG TTCCAGGCGC TTCCGGTCAC CGCTGCGCCG ACCGCGCTCC CTGCGCCGCG CGGCGATATC GACGTCGAAA ATGCCGTGGT CTGGCCGCCG GCGGCAGGCC GCCCGTCGGT CAAGGGGGTC AGCTTCTCGC TCAAGGCCGG CGAGAGCCTC GCGATTGTCG GCGCCTCCGC CAGCGGCAAG TCCAGCATGG CGCGTGCGAT GGCTGGCGTC TGGCCGCTGC GCGAAGGTGT GATCCGCATC GATGGCGCAG CCTACAGCCA GTGGGATCAG AATCGGCTCG GCAAGCATAT CGGCTATCTG CCGCAGGACA TCGAGCTGTT CTCGGGCACG GTCGCGGACA ACATCGCGCG GCTGGCCAAG GTCGACGAAG CCGCTGTGGT CGCGGCGGCC AAGGCTGCTG GCGCGCATGA GGTGATCCTG CGTCTGCCCA ATGGCTATGA CACGCCCATC GGCGAGGGTG GCGTCGCGCT CTCAGGCGGC ATGCGCCAGC GTGTCGGTCT GGCCCGCGCC CTGTATGGCG ATCCACGCCT GCTGATCCTG GACGAGCCGA ACTCCAACCT CGACGAGGAC GGCGAGCGGG CGCTGGCCCA TGCTATGGCC CAGGCAAAGG CCGCCGGCCG GACCGTCATC GTCGTCACGC ATCGCCCGCA GCTTCTCGCG CATGTCGATC GCATCATGGT GATGTCGTTC GGCAAGTCGC TGGCCTTCGG GGAGCGCGAC GAGGTGATCG CCCGGATGCG CGGTCAGCGC GTCGTCGTCG CCCACGATCG TGCGGCCGCC ACCGCTGCCT AA
|
Protein sequence | MTTTTARSPL GTALRACFPA LTATFVLSLF INASMLASPL YSMQVYDRVL TSRNLGTLVM LTLIVGVFLV LYGILEFARS GVLARAGVQF EGTLRHPLFE TMMKAELSPR HRFGQQIIRD AETIRDCISS GTAAIACDLP WTPVFVALCF LQHAYLGILS LLGAVVLFSL ALLTEFYTRS SVERTNALAN EASRFVAAAL RNGEVVRGLG MGDIVMDRWS CRQSAMVDAH STLVERGAAM HSITKFARMA VQTSLLCIGA WLAIEQQISP GAMMATSIIM GRALAPVEQV VGQWKRIIAF RSAYRRLEEL FQALPVTAAP TALPAPRGDI DVENAVVWPP AAGRPSVKGV SFSLKAGESL AIVGASASGK SSMARAMAGV WPLREGVIRI DGAAYSQWDQ NRLGKHIGYL PQDIELFSGT VADNIARLAK VDEAAVVAAA KAAGAHEVIL RLPNGYDTPI GEGGVALSGG MRQRVGLARA LYGDPRLLIL DEPNSNLDED GERALAHAMA QAKAAGRTVI VVTHRPQLLA HVDRIMVMSF GKSLAFGERD EVIARMRGQR VVVAHDRAAA TAA
|
| |