| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_3861 |
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| Symbol | rnd |
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| ID | 5150010 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | - |
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| Start bp | 4044714 |
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| End bp | 4045868 |
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| Gene Length | 1155 bp |
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| Protein Length | 384 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640558699 |
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| Product | ribonuclease D (RNase D) |
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| Protein accession | YP_001239843 |
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| Protein GI | 148255258 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0349] Ribonuclease D |
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| TIGRFAM ID | [TIGR01388] ribonuclease D |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.623671 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.66998 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGACTTGA TCACCACCAC TGCGGATCTT TCAGCCGCCT GCGCCCGCCT CGCCCAACAC
CCGGTCATCA CCGTCGATAC CGAGTTCCTG CGGGAAACCA CCTACTATCC TCTGCTCTGC
GTCGTGCAGA TGGCAAGCCC CGACGAGGCC CTGGTGATCG ACGCCCTGGC CGAGGGCATC
GATCTGACGT CGTTCTTCGA GCTGATGGCC AATGAGAAAG TCCTGAAGGT CTTCCACGCC
GCCCGGCAGG ACATCGAGAT CATCTGGCAC CGCGCCAACA TCGTTCCGCA TCCGATCTTC
GACACCCAGG TCGCCGCGAT GGTGCTGGGA TATGGCGACA GCATTGCCTA CGACCAGCTG
GTCGAACGCA TCACCGGCCA CCGGCCCGAC AAGACCCATC GCTTCACCGA CTGGTCACGG
CGCCCGCTTT CCAAGGAACA GGTGCACTAC GCCGAGGCTG ACGTCACCCA TCTGCGCGAC
GTGTTCGCAG CGCTCGATGC CGACCTCAAG AAGCGCGGCC GCAGCGACTG GGTCAGCGAG
GAGATGGAAA TTCTGACCTC GCCCAGGACC TACGACTTCC ACCCCGAACG CGCCTGGGAA
CGGCTGAAGA CGCGCGTGCG CAAGCCGAAA GAGCTAGCCG TGCTGATGGA GGTCGCAGCC
TGGCGCGAGC AGGAGGCGCA GAGCCGAGAC GTGCCGCGCA GCCGCGTGCT CAAGGACGAT
GCCGTCGGCG ACATCGCCAC GCATGCCCCG ACCTCGATCG AGAAGCTCGG CAATCTGCGC
TCGCTGCCCA AGGGATTCGA ACGCTCGAAA TGGGGCTCCG ACATCGTCGC GGCGGTACAG
CGCGGCCTGG CCCGCGATCT CGCGGCGCTG CCGAAGCTGG AGAAGCCACG CAACAACGCC
AACGGCGCCG CGATCGTCGA GCTGCTCAAG GTGCTGCTGC GCATGACCTC GGAGCGTCAT
GCGGTGGCGA GCAAGGTGAT CGCGACCGTC GACGACCTCG AACAGATTGC CGCCGACGAT
CAGGCCGACG TTGCCGCGCT GCAGGGCTGG CGCCGCGAGC TGTTCGGCGA GGCCGCCTTG
GCGCTGAAGC ATGGCAAGCT CGCGCTCGCC ATCGACAAGG GCCGCGTGAT CCGGGTCGAT
CGCCTGATCC CATGA
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| Protein sequence | MDLITTTADL SAACARLAQH PVITVDTEFL RETTYYPLLC VVQMASPDEA LVIDALAEGI
DLTSFFELMA NEKVLKVFHA ARQDIEIIWH RANIVPHPIF DTQVAAMVLG YGDSIAYDQL
VERITGHRPD KTHRFTDWSR RPLSKEQVHY AEADVTHLRD VFAALDADLK KRGRSDWVSE
EMEILTSPRT YDFHPERAWE RLKTRVRKPK ELAVLMEVAA WREQEAQSRD VPRSRVLKDD
AVGDIATHAP TSIEKLGNLR SLPKGFERSK WGSDIVAAVQ RGLARDLAAL PKLEKPRNNA
NGAAIVELLK VLLRMTSERH AVASKVIATV DDLEQIAADD QADVAALQGW RRELFGEAAL
ALKHGKLALA IDKGRVIRVD RLIP
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