| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_3762 |
|---|
| Symbol | prfC |
|---|
| ID | 5155966 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 3939991 |
|---|
| End bp | 3941610 |
|---|
| Gene Length | 1620 bp |
|---|
| Protein Length | 539 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640558602 |
|---|
| Product | peptide chain release factor 3 |
|---|
| Protein accession | YP_001239746 |
|---|
| Protein GI | 148255161 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG4108] Peptide chain release factor RF-3 |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00503] peptide chain release factor 3 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0113142 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGATA CCGCCGTCAC GACCGAACAG CCCGCCCGCA CCGCCTTGTC CGACGAGGTG
GCGCGCCGGC GCACCTTCGC CATCATCTCG CATCCGGACG CCGGCAAGAC CACGCTGACC
GAGAAACTCC TGCTGTTCGG CGGCGCCATC AACCTTGCCG GCCAGGTCAA GGCCAAGGGC
GAGCGCCGCA ACACCCGCTC GGACTGGATG AAGATCGAGC GCGAGCGCGG CATCTCCGTC
GTGACCTCGG TGATGACCTT TGAGTTCGAG GGGCTCGTGT TCAATCTCTT GGACACGCCG
GGCCACGAAG ACTTCAGCGA GGATACTTAC CGCACGCTCA CCGCAGTCGA CTCCGCCGTC
ATGGTGATCG ACGCCGCCAA GGGCATCGAA GCGCGCACGC GAAAACTGTT CGAGGTGTGC
CGCCTGCGCG ACATCCCGAT CATCACCTTC ATCAACAAGA TGGACCGCGA GAGCCGCGAC
ACCTTCGATC TCCTCGACGA GATCGAGAAG ACGCTGGCGC TCGACACCAC GCCGATGACC
TGGCCGGTCG GCCGCGGCCG CGACTTCATC GGCACCTATG ACATCCGCGA CGGCGGCGTG
CGTCTGCTCG AAGGCGGCGG CGCCAAGACC GGCGCCGCGC AGCAGATCGA GATCTCCGAG
CTCGGCAAGA TCAACGCCAA TCTCGACATG AGCCAGATCA CTGACGAACT GGAGCTGGTC
AGGGAGGCCT GCAAGCCGTT CGAGCTGGAT GCGTTCCGCG AGGGCCATCT GACGCCGGTC
TATTTCGGCA GCGCGCTGCG CAATTTCGGC GTCGGCGATC TCCTGGAAGG CCTCGGCCGC
TATGCGCCGT CGCCGCGCGC GCAGGAATCC AACCTGCGTA AGGTCGATGC CGCCGAGCCG
CGCATGAGCG CCTTCGTCTT CAAGATCCAG GCGAACATGG ACCCGAACCA CCGCGACCGC
ATCGCCTTCG CACGGCTGTG CTCGGGCAAG CTCAACCGCG GCATGAAGGC GAAGCTGGTG
CGCACCGGCA AGACCATGCC GCTGTCGAGC CCGCAATTCT TCTTCGCCCA GGACCGCTCG
GTGGCGGACG AAGCCTTCGC CGGCGACGTC GTCGGCATTC CCAATCATGG CTCGTTGCGC
ATCGGCGACA CCCTGACCGA GGGCGAGGAC CTCACCTTCG TCGGCGTGCC GAGCTTCGCG
CCGGAAATCG TCCGCCGCGT CAGGCTGACC GACGCGATGA AGGCCAAGAA GCTGAAGGAA
GCGCTGCAGC AGATGTCGGA GGAGGGCGTC GTGCAGGTGT TCCGGCCGCG CGACGGCGCG
CCGGCGCTCG TCGGCGTCGT CGGCCCGCTG CAGCTCGACG TGCTCAAGGC GCGGCTCGAT
GCCGAATATT CGCTGCCCGT CGAGTTCGAG ATCTCCGAGT TCTCGCTGGC GCGCTGGATC
TCCTGCGATG ACAAGAAGAA GCTCGAGGCC TTCATCGCCG CCAACAATTC CGGCGTCGCC
GACGATGTCG ATGGCGACCC GGTGTTCCTG GCCAAGAACG AGTTCTATCT CGGCTACACC
AAGGAGCGCG CCGAAGGCAT CGTGTTCTCC AACGTCAAGG ACGTGAAGAA GAAGGCGTAG
|
|---|
| Protein sequence | MSDTAVTTEQ PARTALSDEV ARRRTFAIIS HPDAGKTTLT EKLLLFGGAI NLAGQVKAKG
ERRNTRSDWM KIERERGISV VTSVMTFEFE GLVFNLLDTP GHEDFSEDTY RTLTAVDSAV
MVIDAAKGIE ARTRKLFEVC RLRDIPIITF INKMDRESRD TFDLLDEIEK TLALDTTPMT
WPVGRGRDFI GTYDIRDGGV RLLEGGGAKT GAAQQIEISE LGKINANLDM SQITDELELV
REACKPFELD AFREGHLTPV YFGSALRNFG VGDLLEGLGR YAPSPRAQES NLRKVDAAEP
RMSAFVFKIQ ANMDPNHRDR IAFARLCSGK LNRGMKAKLV RTGKTMPLSS PQFFFAQDRS
VADEAFAGDV VGIPNHGSLR IGDTLTEGED LTFVGVPSFA PEIVRRVRLT DAMKAKKLKE
ALQQMSEEGV VQVFRPRDGA PALVGVVGPL QLDVLKARLD AEYSLPVEFE ISEFSLARWI
SCDDKKKLEA FIAANNSGVA DDVDGDPVFL AKNEFYLGYT KERAEGIVFS NVKDVKKKA
|
|---|
| |