| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_3720 |
|---|
| Symbol | |
|---|
| ID | 5154956 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | - |
|---|
| Start bp | 3899886 |
|---|
| End bp | 3900887 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640558558 |
|---|
| Product | RND family efflux pump membrane fusion protein |
|---|
| Protein accession | YP_001239704 |
|---|
| Protein GI | 148255119 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0718738 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCACAT TATCGCTCCT GAGCTTGATC GCCGCGATGA CGTGGCAGAT GGGCTGGCAG
GCCGCGCCGG TGCATGCCGA GACGCTGACC GTCACACCGC GCCAAGTCGC CGACGAGAAG
GCGGTGTTCG CGACGGTGGA AAGCATCAGC GTGGTCCCGG CGCGCGGCCG CATCGGCGGC
ACGATCGCGC AGCTCTCCGT TCGCGAAGGC GACCCCGTGA AGCGCGGCCA GCCGATCGCT
CTGATCGGCG ATGAGAAGCT CGCTCTGCAG CTCAAATCGC TCGACGCCCA GATCGAGGCG
CTGCAGGCGC AGGCCAACCA GGCGCAAATC GACTTCACGC GTACCGAAGG CCTCGTCGAA
CGCGGCACCC TGCCCCGTGT CAAGCTCGAC GAGACGCGCA CCGCGCTCAA TGTCGCCGAG
AACGGCCTGC GGGCCAAGAC CGCCGAGCGC GCGGTGGTCA ATCAACAGAT GAGCGAAGGC
CAGGTGCTGG CGCCCGATGA CGGCCGCGTG CTGAAGAAGC TGGTGACGGT CGGCTCGGTG
GTTCTACCCG GCGATCCCGT GGTCACGGTG GCGCAGCAGA ACTTCAAGCT GCGGCTGCGC
GTGCCCGAAC GCCATGCGCT GTTCCTGAAA GCCGGTGACA AGATCCGCCT GGATGGTGCC
GAGTTCGGCG AAAGCGGCGA CAAATGGGGG GTCATCGACC TCGTCTATCC GCAGATCGAG
GAAGGACGCG TCGTCGCCGA TGCGATTGTT CCCGGCCTCG GCCAGTACTT CGTCGGCGAC
CGGCTACGCG TCTGGATCTC CGGCGGCCAG CGCGACGCCT ATGTGATCCC CGCCCGCTAC
GTCACGACCC GCTTCGGCAT CGACTACGTC CAGCTGCAGC AGGGAGCGCA GAAGGCGAGC
GTACCGGTGC AGCGGGGCCG CGCCCTGCCG AGCGCCGATG TTCCCGATGG TCTCGAAATC
CTGTCCGGCC TGCGCGCCGG CGACCAATTG GTGCAGCCGT GA
|
|---|
| Protein sequence | MRTLSLLSLI AAMTWQMGWQ AAPVHAETLT VTPRQVADEK AVFATVESIS VVPARGRIGG
TIAQLSVREG DPVKRGQPIA LIGDEKLALQ LKSLDAQIEA LQAQANQAQI DFTRTEGLVE
RGTLPRVKLD ETRTALNVAE NGLRAKTAER AVVNQQMSEG QVLAPDDGRV LKKLVTVGSV
VLPGDPVVTV AQQNFKLRLR VPERHALFLK AGDKIRLDGA EFGESGDKWG VIDLVYPQIE
EGRVVADAIV PGLGQYFVGD RLRVWISGGQ RDAYVIPARY VTTRFGIDYV QLQQGAQKAS
VPVQRGRALP SADVPDGLEI LSGLRAGDQL VQP
|
|---|
| |