Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BBta_3626 |
Symbol | |
ID | 5153069 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bradyrhizobium sp. BTAi1 |
Kingdom | Bacteria |
Replicon accession | NC_009485 |
Strand | - |
Start bp | 3791715 |
End bp | 3793595 |
Gene Length | 1881 bp |
Protein Length | 626 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640558472 |
Product | sigma-54-dependent transcriptional regulator HTH Fis-type family |
Protein accession | YP_001239618 |
Protein GI | 148255033 |
COG category | [K] Transcription [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.139273 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGCCTG CCAGCCGGCG CCTCGATGGC GCGTGGTTGA AGCTCGACGA TGAGGGGCAT CCGCCAGCCG GTCTGATGTC GGCCGACATC TACGACAGCT GGATGCGCTG CATCACGTTG GGTCTCGATG CGCTGCGTCC GCCCTCGCCC GAATTCGTCG ATGCCGCCGT GCTGCGGCAG GAGCAGCAAC GCTGCTCGCT GGTGCGCGGC CTCGCTTTGG CCGAGATGCA CACGCTGCAT CAGCAGATCG CCGGCTCCAA TTTCATGATC GCGTTTGCCA CCGCCGAAGG GCTTCTGCTC GACAGCATCT CGGATTCCAG CTTCAGCGAT GCGTCAGATG CCGCCTGCAT CCGCGCGGGC TCGATCTGGA CCGAGAGCAT CTGCGGCACC AATGGGCTCG GCACGGCGGC CTATCTGAAG CGGCCGATCG TCGTGCACGG CCGCGAGCAC TTTTTCGCCC GCTACAACAA CCTGACCTGC GTGGCGGCGC CGATCTTCGC GCCCGACGGC GAGGTCGCCG GCATCCTCGA CGCGTCGTCC GATTGCATGT CGCGCCAGGC GCACACACAG GCGCTGGTGG CGATGGCCGC GACCCAGATC GAGAACGGGC TGTTCCGCGA GCAGCATCGC GGCAACATAC TGATCGCCTT CCACAACCGC GGCGAATATC TGCACACGCT GAGCGCCGGC CTGCTGGCCG TCGACAATGA CGGCCGGATT CTCGCCGCCA ACCGCGCCGC GCGTGTGCTG CTGCACGGCC TGCCGGCCTT CGCCGGCCGC CTGTTCGGCG ATGTGTTCCG TGGCCGGTTC AGTGACTTCG TCGACGAGGG CCGGCGCAAG GAGCGACAGC GGCTCGAGGA CGATGTCGGG AGCCAGTTCG TCGCGACGAT CGAGAACAGC CGCCAGTTCC CGATGACGCA TCGCGTGCTG GCACCACGGC CCGCGCCGCC GAAGAGCCCG GCGGCGGCGT TCGTCTCCGC CGATCCGAGG ATCGCGGCCA TCGTGCAGCG CGTCGCCATC GCCGCCGCGC GCAAGATGCC GATCCTCATT CGCGGCGAGA CCGGCACCGG CAAGGAGCAG ATGGCACGGC ACGCCCATGC GGCGAGCCAG CGCGCCGGCT CCTTCGTCGC CGTCAATTGC GCCGCCCTTC CCGACAGCCT GATCGAGGCC GAGCTGTTCG GCTATACAGA AGGCGCCTTC ACCGGTGCCA GGAAAGGCGG CTCGGCCGGC CTGTTCAAGG AGGCCGATGG CGGCACGCTT TTTCTCGACG AGATCGGCGA CATGCCGGTG ACGTTGCAGG CAGTGCTGCT GCGCTTCCTC GACGACTGGA CGGTGCGGCC GGTCGGCGGC AGCAAGCGCG AGGTCGACGT GCTCCTGGTG TCGGCCACCA ACGCCAATCT CGACGACGCG ATCGCCAAAG GCCGCTTCCG ATCCGACCTG CTGTTTCGCC TCAACACGCT CGAAGTGACG CTGCTGCCGC TGCGCGAGCG CACCGACTTC GCCGACATCG CCCGCCATTT GATGGCGAAG ATCGATCCGT CGATCGCACT GTCCGAGGCT GCCATTCAGC GGCTTGCACA GCGGAGCTGG GACGGCAACA TCCGCGAGCT TCGCAACGTC CTGGCGCGGC TGTCGCTCAG CGAGACCGGC CCGGTAATCG ACGCCGCCAC CGTCGACGCC GCCATCGGAC CCGGCAGCGC CGAGCCCGTC GCGCCAAAGA TCAAGATGAA CGAAAGCGCA CCGGCCGACC TGCACGAGAT CCAGCGCGCC CTCGTGCTCG CCACCTTCGC GGAGACCGGC AACAATATCA GCAAGACGGC GCGGCGGCTC GGCATCTCGC GCAACACCGT CTATCGCGCG CTGCGCGGCA AGCCGGGCTG A
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Protein sequence | MLPASRRLDG AWLKLDDEGH PPAGLMSADI YDSWMRCITL GLDALRPPSP EFVDAAVLRQ EQQRCSLVRG LALAEMHTLH QQIAGSNFMI AFATAEGLLL DSISDSSFSD ASDAACIRAG SIWTESICGT NGLGTAAYLK RPIVVHGREH FFARYNNLTC VAAPIFAPDG EVAGILDASS DCMSRQAHTQ ALVAMAATQI ENGLFREQHR GNILIAFHNR GEYLHTLSAG LLAVDNDGRI LAANRAARVL LHGLPAFAGR LFGDVFRGRF SDFVDEGRRK ERQRLEDDVG SQFVATIENS RQFPMTHRVL APRPAPPKSP AAAFVSADPR IAAIVQRVAI AAARKMPILI RGETGTGKEQ MARHAHAASQ RAGSFVAVNC AALPDSLIEA ELFGYTEGAF TGARKGGSAG LFKEADGGTL FLDEIGDMPV TLQAVLLRFL DDWTVRPVGG SKREVDVLLV SATNANLDDA IAKGRFRSDL LFRLNTLEVT LLPLRERTDF ADIARHLMAK IDPSIALSEA AIQRLAQRSW DGNIRELRNV LARLSLSETG PVIDAATVDA AIGPGSAEPV APKIKMNESA PADLHEIQRA LVLATFAETG NNISKTARRL GISRNTVYRA LRGKPG
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