| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_3479 |
|---|
| Symbol | |
|---|
| ID | 5149503 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | - |
|---|
| Start bp | 3633392 |
|---|
| End bp | 3634078 |
|---|
| Gene Length | 687 bp |
|---|
| Protein Length | 228 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640558331 |
|---|
| Product | putative spermidine synthase |
|---|
| Protein accession | YP_001239478 |
|---|
| Protein GI | 148254893 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0421] Spermidine synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.744085 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGATCCCCT GGAAGCTGAT CGACACCGCA GACGTCCCGG GCGGCGGCGA GCCGCTGCGG
CTGATGCAGC GCGGCAAGGA GTTCACCATC AAGCTCGGCC AGAACGAGCT GATGAGCAGC
CGCCTCTACG GATCCGAGGA GGCGCTGGCG ACCCTGAGCT GCGCCCGTCT CAAGGCCCGG
CTCGATCCGC ATCTTTTGAT CGGCGGCCTC GGCATGGGCT TCACGCTGCG CGCGGCCTTG
AAGGTGCTGG GGCCGCAGGC CCGGATCACC GTGGCAGAGC TGGTGCCCGC GGTGATCGCC
TGGGCACGCG GCCCGATGGC CGAATTGTCG GGCGAAAGCC TGCTCGATCC GCGCGTCGAC
ATCCGCGAAG CCGACGTGGT GCGACTGATC GCGGGCGGAC GCGGCACGTA TGATGCCATC
CTGCTCGACG TCGACAACGG TCCGCAGGGC CTGACCCGGC AATCGAACGA CGCGCTTTAT
GACTCGTCCG GCCTGCGGAC GGCGTTCGCC GCGTTGCGCC CCGGCGGGGT GCTGGCGGTG
TGGTCGTCGC ACCCCGACGA TCGCTTCGCC CCGCGCTTGC GCAAGGCCGG CTTCGACACC
GAGGAGATCA AGATCCGCGC CACCGGTCGC GGCGGTGGCG GTGGCGCCCG CCATGTCATC
TGGATCGCGA CGCGACCGGC GCGATGA
|
|---|
| Protein sequence | MIPWKLIDTA DVPGGGEPLR LMQRGKEFTI KLGQNELMSS RLYGSEEALA TLSCARLKAR
LDPHLLIGGL GMGFTLRAAL KVLGPQARIT VAELVPAVIA WARGPMAELS GESLLDPRVD
IREADVVRLI AGGRGTYDAI LLDVDNGPQG LTRQSNDALY DSSGLRTAFA ALRPGGVLAV
WSSHPDDRFA PRLRKAGFDT EEIKIRATGR GGGGGARHVI WIATRPAR
|
|---|
| |