| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_3458 |
|---|
| Symbol | |
|---|
| ID | 5155560 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | - |
|---|
| Start bp | 3606995 |
|---|
| End bp | 3607531 |
|---|
| Gene Length | 537 bp |
|---|
| Protein Length | 178 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640558310 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001239457 |
|---|
| Protein GI | 148254872 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3577] Predicted aspartyl protease |
|---|
| TIGRFAM ID | [TIGR02281] clan AA aspartic protease, TIGR02281 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.220051 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAAGG TCGTGCTCGT CCTGGTCACC ATGGTGACCA CCGCAAGTGC CGTGATCGTC
TACAAGGATC CCGAACAGGC TGCGCTGGCG AGCGACACCG TTTCGGAGAT GCTGCGCAGC
CGCGCCTTCC GCGCCAAGGC AAGCCCACCG ACCAACGCGG TCGAGATCGA GCGCACCCGC
GGCGGCGAGT TTGCGCTGCG CGCCAAGATC AACGGCGTCA CCGCGCCGAT GGTCGTCGAC
ACCGGCGCGA CATCGGTGGT GCTGACCTAT GAGACCGCCA AGGCGGCAGG CCTGCCGCTC
GAGCTGCTCA ACTACGATGT CGATGTCGAG ACCGCCGGCG GCCACACCAA GGCGGCGCGG
CTGACGCTCG ATCGGCTCGC GATCGGCCGG CTGGTGGAGC GCTCCGTGCC GGCGCTGGTG
GTGCCGCACG GCCAGATGAA AACGAATCTG CTCGGCATGA GCTTCCTCGA CCGGCTCGAA
CGCTGGGAGG TGCGCTCCGA CCGGCTGATG CTGCACGGCT ATCCAGAGCG CAGCTGA
|
|---|
| Protein sequence | MNKVVLVLVT MVTTASAVIV YKDPEQAALA SDTVSEMLRS RAFRAKASPP TNAVEIERTR
GGEFALRAKI NGVTAPMVVD TGATSVVLTY ETAKAAGLPL ELLNYDVDVE TAGGHTKAAR
LTLDRLAIGR LVERSVPALV VPHGQMKTNL LGMSFLDRLE RWEVRSDRLM LHGYPERS
|
|---|
| |