| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_3379 |
|---|
| Symbol | |
|---|
| ID | 5155772 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 3534341 |
|---|
| End bp | 3535225 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640558237 |
|---|
| Product | putative phosphonate transport system binding protein htxB precursor phnD |
|---|
| Protein accession | YP_001239384 |
|---|
| Protein GI | 148254799 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3221] ABC-type phosphate/phosphonate transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR01098] phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.574529 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGTCG ATTCCGGCAA GCGCCAAAAA ATTGCGATTT TCGGGCTGCT GTTCGCCCTG
GTCATGTCGT TGCCGGCGAC CGTGGGGCAC GCCGCGGAGA AGCTGCGCTT TGCCGTCGGT
CCTTTTCAGC CGACCCCGGG GGATACCAGG AAGGCCTATG ACCCCTTCTT CAAATACCTG
GCCGAGCAGC TTGGATCCGA CTACGAGCTG GTCGTGACCA ACGACTGGGC CGGCATCTCG
ACGGCCCTCG CGAACGGCCA AGCCGATATC GCATGGATGG GGCCGTGGGG GTACGTCCTC
GCCAACAATG AGGGCGGCGC GCAGGCCGTC GCGACCGTCA AATACGACGG ACAGCCGACC
TATCACGCCA TCATCGTCGC GCGGCCGCAG CTCGAGATCA AGACGTTTCC CGAAGATGCG
AAGGGACTGT CGATATCCTT CGCCGACGTA GGATCCACCT CCGGCTGGCT GATCCCCTCC
TACTGGTTCA AGTCGCAGCA CATCGATCCA AGAACCTACT TCAAATATCG GGACGGCGCC
TCGCATCCCG CCAATGAGAT GGCCGTGTCC AGCGGGCAGG TCGATCTGGC GACGGACTAC
GACCGCAACC TCAACAGCAT GATCGAGCGC GGATTGATCA AACGTGAGGA CGTCAAGATC
GTCTGGACGT CGGAGCCGCT TCCCAACGAT CCCATGGTGG TGCGCAAGGA CCTCGATCAA
TCCATTGTTG CCAAGCTCAA GACCGTGCTC GGATCCATAT CTGAGCGGCA GGCGAAGACG
ATCATGCCAC CGCACTATAC TGGCTGGGTG CCCGCGACGG CTGCCACCTA TCAGTTGATC
CGGGACGCAG GCGTTGCCGT CGGCAAGCTG AAAGTGACGA ACTGA
|
|---|
| Protein sequence | MTVDSGKRQK IAIFGLLFAL VMSLPATVGH AAEKLRFAVG PFQPTPGDTR KAYDPFFKYL
AEQLGSDYEL VVTNDWAGIS TALANGQADI AWMGPWGYVL ANNEGGAQAV ATVKYDGQPT
YHAIIVARPQ LEIKTFPEDA KGLSISFADV GSTSGWLIPS YWFKSQHIDP RTYFKYRDGA
SHPANEMAVS SGQVDLATDY DRNLNSMIER GLIKREDVKI VWTSEPLPND PMVVRKDLDQ
SIVAKLKTVL GSISERQAKT IMPPHYTGWV PATAATYQLI RDAGVAVGKL KVTN
|
|---|
| |