Gene BBta_3350 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBBta_3350 
Symbol 
ID5153937 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBradyrhizobium sp. BTAi1 
KingdomBacteria 
Replicon accessionNC_009485 
Strand
Start bp3505071 
End bp3505901 
Gene Length831 bp 
Protein Length276 aa 
Translation table11 
GC content65% 
IMG OID640558210 
Productputative lytic transglycosylase 
Protein accessionYP_001239357 
Protein GI148254772 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.124334 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value0.958591 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACGACG GTCGCCGGCC CTTCGGTGCT CGTTCGATCG CTCAGACCTC CGCTGGCTCG 
TTCGTCGCGG CCGCTTCTCG CGTCGTCGCT ACGCAAGTCC GGAGGCACGG GCAGAGCGTT
ATCATCGCTG CAGTCCTCGC ATGGTCGATT GTCGCCGGCG CGACAGCACA GGCCTCCCCG
TCGTCCTCCC GTCTGCACGT CGTGAGCACG TCCTCTGTTG ACACATTTGC AGGTTCTGTG
AGCGAAGCTG CGCATCGGTT CGATATTCCC GAGCGCTGGA TCTATGCCGT CATGCGCGCT
GAAAGCGGCG GTGATCGGCG GGCTCGCTCG TCAAAGGGCG CCGTCGGCCT GATGCAGATC
ATGCCGGAGA CCTGGCGCGA TTTGCGCGCC CGCTACGGCC TTGGGGCTGA TCCCTTCGAT
CCTCACGACA ACGTTCTGGC GGGCGCAGCC TATCTTCGCG AGCTGCACGA CCGTTATGGA
TCGCCTGGGT TCCTCGCAGC CTACAATGCG GGTCCCGGGC GGTATGAACG TCATCTGGCA
ACGGGCCGGC CGCTGCCGGA CGAAACCCGA GCCTACGTCG CGAAGCTTTC GTCCGCCGTC
GGCGGTGTGC AAGCCCAACG GCCTGTCGAT GTCTCCCGAG CGGCAGCGTT CTCGCTTGCG
GATTTGTTCG CCCCGCGCGG TTCGCAACGC ATGGCCGACG ATCATCCGAG TGTAACTGGC
AAGCGCTCGG TCAGATCATT GCGTGTCGCT CGCCGCGGCA ATCTTTCGTC GCTTCTACCG
CGGCCGCATG CGTTGTTTGC TCGGCATGCC GGCGGAAATC TCTGGCGATG A
 
Protein sequence
MHDGRRPFGA RSIAQTSAGS FVAAASRVVA TQVRRHGQSV IIAAVLAWSI VAGATAQASP 
SSSRLHVVST SSVDTFAGSV SEAAHRFDIP ERWIYAVMRA ESGGDRRARS SKGAVGLMQI
MPETWRDLRA RYGLGADPFD PHDNVLAGAA YLRELHDRYG SPGFLAAYNA GPGRYERHLA
TGRPLPDETR AYVAKLSSAV GGVQAQRPVD VSRAAAFSLA DLFAPRGSQR MADDHPSVTG
KRSVRSLRVA RRGNLSSLLP RPHALFARHA GGNLWR