Gene BBta_3056 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBBta_3056 
Symbol 
ID5149437 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBradyrhizobium sp. BTAi1 
KingdomBacteria 
Replicon accessionNC_009485 
Strand
Start bp3189869 
End bp3192148 
Gene Length2280 bp 
Protein Length759 aa 
Translation table11 
GC content67% 
IMG OID640557927 
Productputative penicillin-binding protein 
Protein accessionYP_001239081 
Protein GI148254496 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0744] Membrane carboxypeptidase (penicillin-binding protein) 
TIGRFAM ID[TIGR02074] penicillin-binding protein, 1A family 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCGGCAGA TCATTCCAGA CGAATGGAAG AAGCGGATCA ACAATTTCCG CCTGGATCTC 
GACGCCCGGT TCGATTCGGC GTTGTTCTCC TCGCTGCGCG GCACCCGCGA GCTGTATGAG
CGCTATTCGG CGTTCATGGA CCGCTTCTAC GTCGGCGGCT GGAAGCGCTG GGTGTTCGTC
GAGCCGCTGT CGGAGGCTGC AACGATCGGC CTCGGCGGCC TGGTCCTGAT GTTGGCGCTC
GCGATCCCCG CGTTCCGGGA AACGGCGGAC GAGGACTGGC TGAAGAAGTC CGACCTCGCG
GTCACCTTCC TCGACCGCTA CGGCAACCCG ATCGGCAGCC GCGGCATCAA GCACAACGAC
TCGATCCCGC TGGAGGACTT CCCGGATAAT CTGATCAAGG CGACGCTCGC CACCGAGGAC
CGCCGCTTCT ACGACCATTT CGGCATCGAC TTCCCCGGCC TCGCGCGCGC GCTCGTCACC
AACGCCCAGG CCGGCGGCGT CCGCCAGGGC GGCTCCTCGA TCAGCCAGCA GCTCGCCAAG
AACCTGTTCC TGTCCAACGA GCGCACCATC GAGCGCAAGG TCAACGAGGC GTTCCTGGCG
ATCTGGCTCG AGACCCGCCT GACCAAGAAC GAGATCCTCA AGCTCTATCT CGATCGCGCC
TATATGGGCG GCGGCACCTT CGGCGTCGAC GGCGCGGCGC ATTTCTACTT CAACAAGTCG
GTGCGCGACA TCAACCTGGC CGAGGCCGCG ATGCTGGCCG GCCTGTTCAA GGCGCCGACC
AAATTCGCGC CGCACATCAA CCTGCCCGCC GCCCGTGCCC GCGCCAATGT GGTGCTCGAC
AATCTCGTCG ATGCCGGCTT CATGACCGAG GGCCAGGTGT TCGGCGCCCG CCGCAACCCG
GCCTTTGCGG TCGACCGCCG CGACGAAAGC TCGCCCAACT ACTTCCTCGA CTATGCCTTC
GACGAGATGC GCAAGCTGGT CGACACGTTC CCGAAATCCT ACACCGAGCG CGTGTTCGTG
GTGCGGACTT CGATCGACAT GAACGTGCAG CATGCTGCCG ACGAGGCGAT CGAGAACCAG
CTGCGCCAGT TCGGCCGCGA CTACCATGCC ACCCAGGCCG CCACCGTGGT CTCAGACCTC
GACGGTGGCA TCCGCGCCAT GGTCGGCGGC CGCGACTACG GCGCCAGCCA GTTCAACCGC
GCCACCGACG CCTATCGGCA GCCGGGCTCG TCGTTCAAGC CGTACGTGTA CACGACGGCG
CTGCTCAACG GCTACAAGCC GACCTCGACC ATTGTCGACG GCCCGGTCTG CATCGGCAAT
TGGTGTCCGC AGAACTATGG CCATTCCTAT TCCGGCACGG TGACGCTGAC GCAGGCGATT
ACCCGCTCGA TCAACGTCGT TCCGGTGAAG CTGTCGATCG CGCTCGGCGG CAAGGAGGGC
CCGAAGGCGG GCCGCGCCAA GATCGTCGAG GTCGCCCGCC GCTTCGGCAT CAAGGCGCCG
CTGCCGGACA CGCCGTCGAT GCCGATCGGC TCCGACGAGG TTACGGTGCT GGAGCACGCT
GTCGCCTATG CGACCTTCCC GAACAAGGGC AAGGCCGTCA CGCCGCATTC GGTGCTGGAG
GTCCGCACCG GCGCCGGTGA CCTGGTCTGG CGCTGGGACC GCGACGGTCC GAAACCGAAG
CAGGCGATCC CGGCCTCGGT GGCCGCCGAC ATGGCGGGCA TGATGAGCCA CGTGGTCAGC
GAGGGGACCG CACGCCGCGC CGCACTCGAC GGCATCCCGA CCGCCGGCAA GACCGGCACC
ACCAACGCCT ACCGTGATGC TTGGTTCGTG GGCTACACCG GAAACTTCAC CTGCGCCGTC
TGGTACGGCA ATGACGACTA TTCGCCGACC AACCGCATGA CCGGCGGCTC GCTGCCGGCG
CAGACTTGGC ACGACATCAT GGTCGCCGCG CATCAGGGCG TCGAGGTCAA GGAGCTGCCC
GGCGTCGGCA TGGGCGAGAA ACTGCCGCAG CCGGCCTCCG CCGCGATGGC CCAGGCAGGC
CAGCCGAAAA CCCTCGAGAT CAAGCCCGGT CCGCCGCCGG TGCTGACCCG CCGTGGCGCC
GAGATCCTGG TCCAGGTCGA GAAAATGCTC GACGATGCCG CCCGCGTCGC CGAGAAGGCG
GCACCGGTCG ATCCGCGCAA GCCGGCCAAG CCCGTGTCGT CGAGCGCGCT CGCCTTCCCT
GAGAACTACG CCGCGGCAAC CGCCGATGGC GTGACCACGC CTGCCTTGCG CAAGAACTGA
 
Protein sequence
MRQIIPDEWK KRINNFRLDL DARFDSALFS SLRGTRELYE RYSAFMDRFY VGGWKRWVFV 
EPLSEAATIG LGGLVLMLAL AIPAFRETAD EDWLKKSDLA VTFLDRYGNP IGSRGIKHND
SIPLEDFPDN LIKATLATED RRFYDHFGID FPGLARALVT NAQAGGVRQG GSSISQQLAK
NLFLSNERTI ERKVNEAFLA IWLETRLTKN EILKLYLDRA YMGGGTFGVD GAAHFYFNKS
VRDINLAEAA MLAGLFKAPT KFAPHINLPA ARARANVVLD NLVDAGFMTE GQVFGARRNP
AFAVDRRDES SPNYFLDYAF DEMRKLVDTF PKSYTERVFV VRTSIDMNVQ HAADEAIENQ
LRQFGRDYHA TQAATVVSDL DGGIRAMVGG RDYGASQFNR ATDAYRQPGS SFKPYVYTTA
LLNGYKPTST IVDGPVCIGN WCPQNYGHSY SGTVTLTQAI TRSINVVPVK LSIALGGKEG
PKAGRAKIVE VARRFGIKAP LPDTPSMPIG SDEVTVLEHA VAYATFPNKG KAVTPHSVLE
VRTGAGDLVW RWDRDGPKPK QAIPASVAAD MAGMMSHVVS EGTARRAALD GIPTAGKTGT
TNAYRDAWFV GYTGNFTCAV WYGNDDYSPT NRMTGGSLPA QTWHDIMVAA HQGVEVKELP
GVGMGEKLPQ PASAAMAQAG QPKTLEIKPG PPPVLTRRGA EILVQVEKML DDAARVAEKA
APVDPRKPAK PVSSSALAFP ENYAAATADG VTTPALRKN