| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_3004 |
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| Symbol | |
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| ID | 5152800 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | - |
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| Start bp | 3140174 |
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| End bp | 3141583 |
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| Gene Length | 1410 bp |
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| Protein Length | 469 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640557878 |
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| Product | putative outer TolC membrane protein |
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| Protein accession | YP_001239032 |
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| Protein GI | 148254447 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.833992 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGGGTC GGGGCAAGCA ATTCACCGGG AGGACGCGGC GGTTCGGCAT TGGCTTGGCC
ATCGCGACGG GGGTCGTCGC CTTCTGCTCG CCGTCCCGCG CCGAGGATCT CGCCGCCGCG
CTGGCCAAGG CCTACCAGAC CAACCCGGCC CTCAATGCCG AGCGCGCCCG GCAGCGCGGA
ACCGATGAGA ACGTACCGCA GGCGCTGGCG GGTTACCGCC CCCAGCTTGT CGCGACTCTC
GGGGCCGGCC TGCAGGCGGT GCGCAATCTG CTTCCGACCA ACGCGATTCA GAGCCAGACG
CTGAAGCCCT GGACCATCGG GCTGACCGTC ACACAGACCC TCTTCAACGG GTTTAGAACC
GCCAACAGCG TACGGGTGGC CGAGCTGCAG GTGCAGTCGG GGCGCGAGGC GTTGCGCAAT
GTCGGCCAGG GCATCCTGCT CGATGCCGTG ACCGCCTATA CCAACGTGCT GGCGAACCAG
TCGCTGGTCG AGGCGCAGCG CTCGAACGTC GCATTCCTGC GCGAAACCCT GGCGGTGACG
CAGCGCCGTC TCAATGCCGG CGACGTGACA CCGACCGATG CATCCCAAGC CGAGGCCCGG
CTGTCCCGCG GACTCTCCGA TCTCAACGCC GCCGAGGTCA ATCTCGCGAT CAGCCAGGCG
ACTTACGCGC AAGTGATCGG CATGGCGCCC GGCCAATTGC GCGCCGCGGA TCCGGTCGAT
CGCCTGCTGC CGCGCAGTCG CGAAGACGCG ATCGCCCTGG CCAACAAAGA GAACCCGGCC
GTGGCCGCGG CGAGCTTCGA CGTCGACGTG GCTTCGACGG CCATCAAGGT TGCCGAGGGC
GCCCTGCTGC CGAGCGTGAC CGTGCAGGGC AGCGTCAGCC GCAGCCGCGA TTCGGACCAG
ACGCTCGGCA CGTTCGGGAC CGACCAAGCC TCGATCCTCG GCAACGTCAC CGCACCGATC
TATGATGGCG GCACGGCCGC CTCGCAGACC CGCCAGGCCA AGGAGGTCGC GGCGCAGAGC
CGTCTCGTCC TCGACCAGGT GCGCAACCAG GCGCGCACCG CCGTGATCAG CGCCTGGGTG
GCCAATGAAG GCGCCAAGGT TGCGGTCAGC GCCTCCGAGG CCGAGGTCAA AGCCGCGACC
GTCGCGCTGC AGGGCGTCTC GCGCGAGGCG CAAGGCGGCC AGCGCACCAC CGTCGATGTG
CTGAACTCGC AGGCCGATCT GATCCAGGCC AAGGCGCGCC TGATCGGCGC CCAGCGCGAC
CGCGTCATCG CCTCCTACAC GCTGCTGAGC GCGATCGGCC GGCTCGACGT CAAGAATCTC
AACCTGAACA CGCCCGATTA TCTGCCGGAG GTTCACTACC ATCAGGTTCG TGACGCCTGG
CACGGCCTGC GCACGCCCTC GGGGCAGTAG
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| Protein sequence | MVGRGKQFTG RTRRFGIGLA IATGVVAFCS PSRAEDLAAA LAKAYQTNPA LNAERARQRG
TDENVPQALA GYRPQLVATL GAGLQAVRNL LPTNAIQSQT LKPWTIGLTV TQTLFNGFRT
ANSVRVAELQ VQSGREALRN VGQGILLDAV TAYTNVLANQ SLVEAQRSNV AFLRETLAVT
QRRLNAGDVT PTDASQAEAR LSRGLSDLNA AEVNLAISQA TYAQVIGMAP GQLRAADPVD
RLLPRSREDA IALANKENPA VAAASFDVDV ASTAIKVAEG ALLPSVTVQG SVSRSRDSDQ
TLGTFGTDQA SILGNVTAPI YDGGTAASQT RQAKEVAAQS RLVLDQVRNQ ARTAVISAWV
ANEGAKVAVS ASEAEVKAAT VALQGVSREA QGGQRTTVDV LNSQADLIQA KARLIGAQRD
RVIASYTLLS AIGRLDVKNL NLNTPDYLPE VHYHQVRDAW HGLRTPSGQ
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