Gene BBta_2988 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBBta_2988 
Symbol 
ID5154587 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBradyrhizobium sp. BTAi1 
KingdomBacteria 
Replicon accessionNC_009485 
Strand
Start bp3119970 
End bp3121220 
Gene Length1251 bp 
Protein Length416 aa 
Translation table11 
GC content63% 
IMG OID640557864 
Producthypothetical protein 
Protein accessionYP_001239018 
Protein GI148254433 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGTCGA ACATGAACCA GTCCCCGCAA TTGCTGAGTA CAAAACGGCT GATCATCGGT 
TTGGCGACGC TGGCCGTGGC CGGCGCGGGT GGCTATGTCT ACGCCCAATT CCGTTCGATG
CCGTCCGCCA AGGACAATAT CGAGCTGTCC AGCCAGTCGC GCCGCAATAG CACCACTTTC
ACGCCCTCGG CAGCGGAATG GGCGACGCTG ACCATCGAGC CGGTCTGTGA CAAGATCTTC
CGCGCAGAGC ACATCACCGA GGGCAAGGTC GCCGTCGACG AGGACCGTTC GACACCGGTT
TTCTCGCCCT ATGCCGGCCG CGTGACCAAG TTGCTGGCGC GCCCGGGCGA GACCGTCCGC
CAGGGCCAGC CGCTGTTCGT CATCGAGGCC GCCGATACTG TCCAGGCGCA GAACGATTTC
ATCACCGCGA TCACCTCGAT GAACAAGGCC AAGTCGGCGC TGGATCTCGC TGATATCCAG
TACAAGCGCG CGAAGGATTT GTTCGAGGGG CGGGCGATCC CGCTGAAGGA CTTTCAGCAG
GCGGAGGCAA CCTCCGTTCA GGCCCAGAAC GACATGCGTT CGTCACAAAC GGCGCTGGAG
GCGGCCCGCA ACAAGCTGCG TATCCTCGGC TTCACCGATG CCGCGATCGC CGATTTCCAG
AACAAGGGCA CCATCGATCG CGAGATCACG ATCTACGCGC CGATCGGCGG CACGGTCGTG
CAGCGCAAGG TCGGGCCGGG CCAGTACGTC AATGCCGGCG CGAGCGATCC CGTGTTCGTG
ATCGGAGATC TGTCGACCGT CTGGCTCACG GCCTTCGTTC GGGAGAGCGA CGCCGCGCTG
GTCGATGTCG GCGAGGAAAT CCTCGTCAAC GTGCTGGCGC TGCCAGGCCG TCCTTTGAAG
GCCAGCATCA ATTATGTCGC CACGTCGATC GACCCGGCGA CGCGCCGGCT GTTGGTGCGC
GCGACCATCG ACAACAAGGA CGGTCTGCTC AAGCCGGAGA TGTTTGCCAA CGTCACGATC
TATTCTCCGG GCGAAAAGCC CGCCGTGGCC GTGCCGCGGC AGGCGCTGAT CTATGAAGGC
AACCAGGTTC GGGTCTGGGT CGCTCGTCCC GACAAATCGA TCGAGCTCCG CAAGATCAAG
ACCGGCCTCG TCAACGGCGA CCAGGTGGCC GTGGAGGACA ATCTGAGCGC GGGCGAGCAG
ATCGTCACCA AAGGCAGCCT GTTCATCGAT CGCGCTGCCT CCGGCAGCTG A
 
Protein sequence
MASNMNQSPQ LLSTKRLIIG LATLAVAGAG GYVYAQFRSM PSAKDNIELS SQSRRNSTTF 
TPSAAEWATL TIEPVCDKIF RAEHITEGKV AVDEDRSTPV FSPYAGRVTK LLARPGETVR
QGQPLFVIEA ADTVQAQNDF ITAITSMNKA KSALDLADIQ YKRAKDLFEG RAIPLKDFQQ
AEATSVQAQN DMRSSQTALE AARNKLRILG FTDAAIADFQ NKGTIDREIT IYAPIGGTVV
QRKVGPGQYV NAGASDPVFV IGDLSTVWLT AFVRESDAAL VDVGEEILVN VLALPGRPLK
ASINYVATSI DPATRRLLVR ATIDNKDGLL KPEMFANVTI YSPGEKPAVA VPRQALIYEG
NQVRVWVARP DKSIELRKIK TGLVNGDQVA VEDNLSAGEQ IVTKGSLFID RAASGS