| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_2884 |
|---|
| Symbol | |
|---|
| ID | 5152546 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 2991078 |
|---|
| End bp | 2992322 |
|---|
| Gene Length | 1245 bp |
|---|
| Protein Length | 414 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640557763 |
|---|
| Product | putative branched-chain amino acid ABC transporter (substrate-binding protein) |
|---|
| Protein accession | YP_001238917 |
|---|
| Protein GI | 148254332 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.144097 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCATCA CGCGCCGTAA CGTCCTGCTT GGAGCCACCG CTGCCGCCGC GCTCGGGCCG
ATTGCTGCCC GTGCCCAGAC GTCCGAGGTG AAGATTGGCG TCATCTATCC GTTCTCCGGT
GCCAGCGCCC AGATCGGCGT CGATGCGCAG CGCGCGTTCG AAACCGCGGC CGAGATCATC
AACGGCAAGT TCGATTACGA TCTCCCGCTC GCCCGTAACG AAGGCCTGCC GGGCCTCGGC
GGCGCCAAGA TCAAGCTGGT GTTCGCCGAT CACCAGGCCG ACCCGCAGAA GGGCCGCGCC
GAGGCCGAGC GCCTGATCAC GCAGGAGAAG GTCGCGGCCG TCATCGGCTC CTATCAGAGC
GCGGTCGCGG TCACCGCGAG CCAGATCTGC GAGCGCTACC AGATCCCGTA TCTGTCGGCC
GACAATTCCT CGCCGAGCCT GCATCGCCGC GGCCTGAAAT ATTATTTCCG CGCCGCGCCG
CATGACGAGA TGTTCTCGCA GGCGATGTTC GACTTCTTCG ACGCGATGAA GAAGAAGGGC
ACCAAGATCG AGACGCTGGC GCTGTTCCAC GAGGACACCA TCTTCGGCAC GGATTCGAGC
AATGCCCAGC TCAAGCTCGC CCAAGAGCGC GGCTACAAGG TCGTCGCCGA CATCAAGTAC
CGCGCCAACT CGCCGTCGCT GTCGGCCGAG GTGCAGCAGC TCAAGGCGGC CAATGCCGAC
GTGCTGATGC CGTCGAGCTA CACCACCGAC GGCATCCTGC TGGTCAAGAC CATGGCCGAG
CTCGGCTACA AGCCGAACGC CATCGTGGCG CAGGACGCCG GCTTCTCGGA GAAGGCGCTG
TATGATGCGG TCGGCGACAA GCTCGAAGGC GTGATCTCGC GCGGCTCGTT CTCGCTCGAC
CTCGCCGCCA AGCGGCCGAT GGTCGGCAAG ATCAACGACA TGTTCAAGGC GAAGTCGGGC
AAGGACTTCA ACGACTATTC CTCGCGCCAG TTCATGGGCC TGATTGTGAT GGCCGACGCC
ATCAACCGCG CCAAGTCGAC GGAGGGCGAG AAGATCCGCG ACGCACTGGC CGCCACCGAC
ATGCCGGGCG AGGCGACCAT CATGCCGTGG AAGCGGGTGA AGTTCGACGA GAATGGCCAG
AACAACGACG CCGATCCGGT GCTGCTGCAA TATGTCGGCG GCAAGTTCGT CACTATCTTC
CCGACACAGG CCGCCGTGGC CGAAGCCAGC TGGCCGATGA AATAA
|
|---|
| Protein sequence | MTITRRNVLL GATAAAALGP IAARAQTSEV KIGVIYPFSG ASAQIGVDAQ RAFETAAEII
NGKFDYDLPL ARNEGLPGLG GAKIKLVFAD HQADPQKGRA EAERLITQEK VAAVIGSYQS
AVAVTASQIC ERYQIPYLSA DNSSPSLHRR GLKYYFRAAP HDEMFSQAMF DFFDAMKKKG
TKIETLALFH EDTIFGTDSS NAQLKLAQER GYKVVADIKY RANSPSLSAE VQQLKAANAD
VLMPSSYTTD GILLVKTMAE LGYKPNAIVA QDAGFSEKAL YDAVGDKLEG VISRGSFSLD
LAAKRPMVGK INDMFKAKSG KDFNDYSSRQ FMGLIVMADA INRAKSTEGE KIRDALAATD
MPGEATIMPW KRVKFDENGQ NNDADPVLLQ YVGGKFVTIF PTQAAVAEAS WPMK
|
|---|
| |