Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BBta_2864 |
Symbol | paaX |
ID | 5152447 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bradyrhizobium sp. BTAi1 |
Kingdom | Bacteria |
Replicon accession | NC_009485 |
Strand | + |
Start bp | 2969904 |
End bp | 2970785 |
Gene Length | 882 bp |
Protein Length | 293 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 640557743 |
Product | phenylacetic acid degradation operon negative regulatory protein paaX |
Protein accession | YP_001238897 |
Protein GI | 148254312 |
COG category | [K] Transcription |
COG ID | [COG3327] Phenylacetic acid-responsive transcriptional repressor |
TIGRFAM ID | [TIGR02277] phenylacetic acid degradation operon negative regulatory protein PaaX |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00499823 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.0484276 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGCAGC CGCTGTCTCG CATCGTCAAC CAGCTCAAGA GCGAGCCGTC GCGCACCGGC TCGCTGATCA TCACCGTGTT CGGCGACGCC ATCGTGCCGC GCGGCGGCAG TGTCTGGCTC GGCAGCCTGC TCGCCTTCTT CGAGGGGCTG GCCATCGATG GCAGCGTGGT GCGCACGGCG ATGTCGCGGC TGACGGCGGA GGGCTGGTTC GAGCGCAGCA AGAGCGGCCG CCACAGCTTC TATCGCCTGA CCCGGCGCGG CGAGCAGACC TTTGCCGGTG CCACCCGGCA CATCTACGAC TCCCCGCCGG CCGAATGGAA CGGCAGCTTC GAACTGCTCT TGCTCGGCAG TGCCGATGAT CGCGAGCAGG CACGCACCGT GCTGCGCGAC GCCGGCTTCG GCAGCCCGCT GCCCGGGGTG TTCGTGGCTC CCTCCAGCAT CGCCGTCCCC GACGCCGTGG AGGGCGCGAT CCGGCTGCAG GCCTCCGCCG GATCTGACAT GGCGCGACGG CTGGTGGCGG AGAGCTGGGC GCTGGAGCGG ACGGCGGAGG CCTACCGCAA GTTCAGCGCG TCTTTTGCCC CCCTCAAATC CAGCATCGAA CGCGGCGAGG CGCTGTCGGA TGGGCAGGCC TTCACCGCGA GGGTTCTGCT GATCCATCAC TATCGCCGCA TCGTGCTGCG CGATCCGCTG CTGCCGGCGG AGCTGCTGCC GGGGAACTGG CCGGGCCGGC AGGCCCGGGC GCTGTGTGGC GAGATCTACC GGCTGCTGCT GCCGGGCTCG GAGCGCTGGC TCGATGCGCA TGCAATCAAC GAAGCAGGGC CGCTGCCCGC CGCCGCTGCG GCGCTGCTGC GGCGGTTCGC CGACGTTGAT GAGGCGCCCT GA
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Protein sequence | MPQPLSRIVN QLKSEPSRTG SLIITVFGDA IVPRGGSVWL GSLLAFFEGL AIDGSVVRTA MSRLTAEGWF ERSKSGRHSF YRLTRRGEQT FAGATRHIYD SPPAEWNGSF ELLLLGSADD REQARTVLRD AGFGSPLPGV FVAPSSIAVP DAVEGAIRLQ ASAGSDMARR LVAESWALER TAEAYRKFSA SFAPLKSSIE RGEALSDGQA FTARVLLIHH YRRIVLRDPL LPAELLPGNW PGRQARALCG EIYRLLLPGS ERWLDAHAIN EAGPLPAAAA ALLRRFADVD EAP
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