| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_2856 |
|---|
| Symbol | |
|---|
| ID | 5152059 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | - |
|---|
| Start bp | 2962604 |
|---|
| End bp | 2963584 |
|---|
| Gene Length | 981 bp |
|---|
| Protein Length | 326 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640557736 |
|---|
| Product | putative oligopeptide ABC transporter (permease protein) |
|---|
| Protein accession | YP_001238890 |
|---|
| Protein GI | 148254305 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.247357 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGCCT TCACGCTTCG CCGAGCAATT CAGGCCATCG GCGTCATGAT CGCCGTCGGG
ATCATCGCGT TCGCCATGTT CCGCTTCGCC GGCGACCCGG TCAGCCAGAT CGTGCCGATC
GACGCCTCCG CCGCGGAACG CGCCCGCGTC CGTGAATCGC TGGGCCTGGA CGATCCTTTC
ATCGTGCAGT TCGGCCGCTA TCTGTTCGAC GCCGCGCAGT TCAAATTCGG CGTGTCCTAT
CAGTTCCGGC AGCCGGTCTC CGATCTGCTC AAGGAGCGCA TGCCGGCGAC CCTGGAGCTC
GCGATCTGCG CGACCATCCT CGCGCTGTTC TTCGGGATCA TCATGGGCGT GTTCTCGGCG
CTGCGCCGCG ACTCGCTGAT GGCCAAGCTG TTCCAGATGG TGTCGCTGAT CGGCATTTCG
CTGCCGACCT TCCTGATCGG TATCCTGCTG ATCTATCTGT TCTCGGTCAC GCTCGGCTGG
CTGCCCTCGT TCGGCCGCGG CGACGTCGTG AAGATCGGTT GGTGGACGAC GGGTCTGCTC
ACCGCCTCCG GATGGAAGGC GCTGATCATG CCCTCGATCA CGCTCGGCCT GTTCCAGATG
ACACTCATCA TGCGGCTGGT CCGCGCCGAG ATGCTGGAGG TGCTGCGCAC CGACTATATC
CGCTTCGCCC GCGCCCGCGG GCTGACCACC CGCGCCATCC ATTTCGGCCA TGCCCTGCGC
AACACGCTGG TTCCGGTCAT CACCGTGGTC GGCCTGCAAT TCGGCTCGGT GATCGCGTTC
TCGATCATCA CCGAGCAGGT GTTCCAATGG CCGGGCATGG GCCTGTTGTT CGTGCAGGCG
GTGCAGAATG TCGACATCCC GATCATGGCG GCCTACCTGA TGATGGTGTC GCTGATCTTC
GTCACCATCA ATCTCGTGGT TGATATCCTC TACACCGTGG TCGATCCGCG CCTGCGCGCG
ACCATCAGCC GCCCGGCCTG A
|
|---|
| Protein sequence | MLAFTLRRAI QAIGVMIAVG IIAFAMFRFA GDPVSQIVPI DASAAERARV RESLGLDDPF
IVQFGRYLFD AAQFKFGVSY QFRQPVSDLL KERMPATLEL AICATILALF FGIIMGVFSA
LRRDSLMAKL FQMVSLIGIS LPTFLIGILL IYLFSVTLGW LPSFGRGDVV KIGWWTTGLL
TASGWKALIM PSITLGLFQM TLIMRLVRAE MLEVLRTDYI RFARARGLTT RAIHFGHALR
NTLVPVITVV GLQFGSVIAF SIITEQVFQW PGMGLLFVQA VQNVDIPIMA AYLMMVSLIF
VTINLVVDIL YTVVDPRLRA TISRPA
|
|---|
| |