Gene BBta_2609 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBBta_2609 
Symbol 
ID5154452 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBradyrhizobium sp. BTAi1 
KingdomBacteria 
Replicon accessionNC_009485 
Strand
Start bp2705035 
End bp2707377 
Gene Length2343 bp 
Protein Length780 aa 
Translation table11 
GC content66% 
IMG OID640557508 
Productputative general secretion pathway protein D 
Protein accessionYP_001238662 
Protein GI148254077 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1450] Type II secretory pathway, component PulD 
TIGRFAM ID[TIGR02517] general secretion pathway protein D 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGGCGGGC GAGTGTTGGC GATTTCTGAT GAGGGCCCTG GTTGGCGGCG ATGCCGTGCG 
CTCGCCGCGC TGGTCATAGT GTCGATGGTG CTGGCGGGCT GCAATCCGGC GACGCTCGGG
AGCGACAGTC GCGGCGACGA CGTGATGGAC AAGGTCGGGC GTCTCGACCT CTCGCCGCGC
TATCCGCGAC AGGTCATGCC GGAGCAGTCG CCGGCGGCGC GCCGTGCGCG GGCGGAGATC
TACGGCGGCA ATGACGATCC CAGGGACGCA CGTGCGGAAC TGCCGGCGGC GCCATCGCTT
CCGGTGCAGG AGGCCGCAGC CCATTCGCAG GCGATCGGCA ACGGCTTCGA GCTGAATTTC
GAGAATTCGC CAATCGCGAC CGTGGCCAAG GTCGTGCTCG GCGACGTGCT TGGTGTCGGC
TACACCATCG ATCCGCGGAT CCAGGGGACC GTGAGCCTGT CGTCGGTGCG TCCGGTGCCG
AAATCGGACG TGGTCTACGT GCTCGAGAAC GCCCTGCGGC TGGCCGGGAC GGCACTTGTA
CGTGATAATT CCGGCTATCG CCTGATTCCG CTCGGTGAGG CAGTCGGCGC GGGCAATGTG
GATGCGCCCG GTGCTGCGGC CGAGCCCGGC TACGGCATCA CGGTGCTTCC GCTGCAATAT
GTCTCGGCAC CGACGCTGCT GAAGCTACTC GACAGCTTCG CACTCAAGCC CGGCACGGTG
CGCGCAGACC CGGGCCGCAA CATGTTGTTA ATCCAGGGCA CCGGCTCCGA GCGACGCACG
GCGGTCGATG CCGCGCTGAG CTTCGACGCA GACTGGATGA AAGGGCAATC GGTCGGGATC
TTCCCGATCG CCAACGGCAA TCCGGAGCCG ATCGTCGCCG AGCTCGAGAA GATCATGGAC
ACCGGCGACA GTGGGCTCGG TCAGAACATG GTCAAGTTCC AGACCATCAG CCGGATGAAC
GCGGTCATGG TCATCAGCCG CAAGCCGGCA CTGCTGCGCA CCGCCGAGAC CTGGATCAAG
CGGCTGGATG CCGGCAACAC GCTCCGCAAC AGCGTTCATG TCTACCGCGT CAAATACGGC
GAAGCGCGGC AGATGGCGCG GGTGTTGAAC GAGATGTTCA CGGGAAATTC GGCCAGCGCC
GACGCGTCGT CGACGGATCT CGCCCCGGGA TCGGGCGCCG CATCGAGTTC GAGCAGCGAG
CGGCTGTCGG CCGCGGGGAC GGCGTCGACA GGCAGTCTCT CGGGTCAGCA GCCCGGCAAC
AACGGTCTGG TCGCCAATCG TGGCTTCGGA GGTGCGCCGC CGGCGACCCA GACGAGCCTC
GATTCGGCCC CGGAGTCGCG CGCGTCCGCC GGCGGCAGCA AGCCGCTGAT GGACGGCGTG
CGCATCACGC CCGACGTGGT CAACAACACG CTGCTGATCT ATGCCGACCG TGAGAACTAC
CGCATCATCG AAGCTACCTT GCGACAGTGC GACCGGCCGC AGCTGCAGGT CGCGATTGAT
GCCACCATCG CCGAAGTGAC GCTCAACGAC AATCTGAACT ACGGCGTGCA GGCCTATCTG
ACCAGCAAGA ATCTTGGCCT GCGGCCAGAT CAAGGCTCAC TCCTCAACAC CACCTCGACA
TCGGCGCCGG CGACGGTCGC CTCGGCCGCC GGGACGATCA CCAACGCCTT CTTGAACCGT
GCCTTTCCGG GCTTCAATTT CCTGATCGGG TCGGAATCGC AGCCGAGCGC CATCCTGAGC
GCGTTGCACA CGGTCACCGA CGTCAAGGTG CTGTCCAATC CTTCGCTGGT GGTGATCGAC
AATCAAGCGG CGACATTGCA GGTCGGCGAC CAGGTGCCGG TGTCGACCGG CAGCGCGACG
GTGCTGACGA CCAACAACAC GGTCGTGAAT ACGATCGACT ATCGCAATAC CGGGATCATC
CTGCGGGTGG CGCCGCGCGT CAACGAGAAC GGCAATGTGC GGCTGGAGAT CGAGCAGGAG
ATCAGCAACG TCTCGCCGCA GACCGCGAAC AGCCTCACGC CGACGGTGGC GCAGCGCAAG
GTCAAGAGCG CGGTCGCGGT CGCCAGCGGT CAGACCGTGC TGCTGGCTGG CCTCATCAGC
GAGACCCATC AGGGTACGCG CAACGGTGTG CCCGGCGTCG ACCAGATCCC GGTGCTGGGC
GATCTGTTCA GCAACAACGA TCGCACCCGC GGGCGGACCG AGCTGATCAT CTTCATCCGC
CCCCAGATCA TCCGCGACGG CACCGATGCG CATTACGTCG CCGAGGAGCT GCGCTCCAAG
CTGCGTGGCA CGATCAGGCC GGTGTCGACG AGCGCCCTTC AGCCGCCGCG GGCCGGCCGA
TGA
 
Protein sequence
MGGRVLAISD EGPGWRRCRA LAALVIVSMV LAGCNPATLG SDSRGDDVMD KVGRLDLSPR 
YPRQVMPEQS PAARRARAEI YGGNDDPRDA RAELPAAPSL PVQEAAAHSQ AIGNGFELNF
ENSPIATVAK VVLGDVLGVG YTIDPRIQGT VSLSSVRPVP KSDVVYVLEN ALRLAGTALV
RDNSGYRLIP LGEAVGAGNV DAPGAAAEPG YGITVLPLQY VSAPTLLKLL DSFALKPGTV
RADPGRNMLL IQGTGSERRT AVDAALSFDA DWMKGQSVGI FPIANGNPEP IVAELEKIMD
TGDSGLGQNM VKFQTISRMN AVMVISRKPA LLRTAETWIK RLDAGNTLRN SVHVYRVKYG
EARQMARVLN EMFTGNSASA DASSTDLAPG SGAASSSSSE RLSAAGTAST GSLSGQQPGN
NGLVANRGFG GAPPATQTSL DSAPESRASA GGSKPLMDGV RITPDVVNNT LLIYADRENY
RIIEATLRQC DRPQLQVAID ATIAEVTLND NLNYGVQAYL TSKNLGLRPD QGSLLNTTST
SAPATVASAA GTITNAFLNR AFPGFNFLIG SESQPSAILS ALHTVTDVKV LSNPSLVVID
NQAATLQVGD QVPVSTGSAT VLTTNNTVVN TIDYRNTGII LRVAPRVNEN GNVRLEIEQE
ISNVSPQTAN SLTPTVAQRK VKSAVAVASG QTVLLAGLIS ETHQGTRNGV PGVDQIPVLG
DLFSNNDRTR GRTELIIFIR PQIIRDGTDA HYVAEELRSK LRGTIRPVST SALQPPRAGR