| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_2360 |
|---|
| Symbol | ppdK |
|---|
| ID | 5150404 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 2446896 |
|---|
| End bp | 2449859 |
|---|
| Gene Length | 2964 bp |
|---|
| Protein Length | 987 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640557281 |
|---|
| Product | pyruvate phosphate dikinase |
|---|
| Protein accession | YP_001238437 |
|---|
| Protein GI | 148253852 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0574] Phosphoenolpyruvate synthase/pyruvate phosphate dikinase |
|---|
| TIGRFAM ID | [TIGR01828] pyruvate, phosphate dikinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.797311 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.119271 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAAG CGGTAGCGAA GTCTAAGAAA GTTGCAGCGA AATCAAAGCC TTCCAAGCCG
GGCAAGGCGA AGGCCGCTCC GCTCGCTCCG CCGCGCAAGG CGCTTAAGAC GGCGCCGAAG
CCGGCCGCCA AGGCCCCGGC CAAGGTGGCT GCGAAGGCGG CGCCCAAAGC GCCGGTGAAA
ACCGCTCCGA AGAAGCCGGC CAAAACGGTC GCCAAGCCGG TTGGCAAGCC TGCCAAAGCC
TCGGCTGCGA AGCCCGCGGC CAAGAGCGCG GCGACCGCGA TCAAGCCGAA CAAGTGGGTC
TATACCTTCG GTGACGGCAA GGCCGAGGGC AAAGCCGGCC TGCGCGACCT GCTCGGTGGC
AAGGGCGCCA ATCTCGCCGA GATGGCCAAT CTCGGCCTGC CGGTGCCTCC GGGCTTCACG
ATTCCGACCT CGGTCTGCAC CTACTTCTAC GCCAACGACA AGACCTATCC GAAGGAGCTG
CAGGCGCAGG TCGACAAGGC GCTCGATTAT ATCGGCAAGC TCACCGACAA GACGTTCGGC
GATCCGGAAA ACCCGCTGCT GGTCTCGGTG CGCTCCGGCG CCCGCGCCTC GATGCCGGGC
ATGATGGACA CCGTGCTCAA CCTCGGCCTC AACGACCAGA CGGTGGAGGC GCTGGCGTCG
CTGTCCGGCG ACCGCCGCTT CGCCTTCGAC AGCTACCGCC GCTTCATCAC GATGTATTCC
GATGTCGTGC TCGGCTTCGA GCACCATCAT TTCGAGGACA TCCTCGACAG CTTCAAGGAC
AGCCAGGGCT ATCAGCTCGA CACCGATCTC TCGTCCGAGG ATTGGGAGAT GCTGGTCGGC
AAGTACAAGG AAGCGGTCGC CACTGAGACC GGCAAGGAGT TCCCGCAGGA TCCGCATGAC
CAGCTGTGGG GCGCGATCGG CGCGGTGTTC TCATCCTGGA TGAACGCGCG CGCGGTAACT
TATCGCAAGC TGCACGACAT TCCGGAGTCG TGGGGTACGG CCGTCAACGT CCAGGCGATG
GTGTTCGGCA ACATGGGTGA CACCTCGGCC ACCGGCGTCG CCTTCACCCG CAATCCCTCG
ACGGGTGAGA GCAAGCTGTA TGGCGAGTTC CTGATCAATG CCCAGGGCGA GGACGTCGTC
GCCGGCATCC GCACCCCGCA GGACATCACC GAGGACGCGC GCATCGAGTC CGGCTCCGAC
CGGGCTTCGA TGGAAGTCGC GATGCCCGAG GCGTTCAAGG AGCTGACCCG CATCTACACG
CTGCTCGAAA AGCACTACCG TGACATGCAG GACATGGAGT TCACGGTCGA GCGCGGCAAG
CTGTGGATGC TGCAGACCCG CAGCGGCAAG CGCACCGCCA AGGCGGCGTT GCGCATCGCC
GTCGAGCTCG CCAATGAAGG CCTGATCTCG GAGAACGACG CCGTGCTGCG CGTCGATCCG
GCCTCGCTCG ATCAGCTGCT GCATCCGACC ATCGATCCCG CTGCCAAGCG CGACGTGGTC
GCGACCGGCC TGCCGGCCTC GCCGGGCGCA GCCTCGGGCG AGATCGTGTT CTCCTCGGAC
GAGGCGACCA AGCTGCAGGC CGATGGCCGC AAGGTCATCC TGGTCCGCAT CGAGACCTCA
CCGGAAGACA TCCACGGCAT GCACGCCGCG GAAGGCATCC TCACCACGCG CGGCGGCATG
ACCTCGCATG CAGCGGTGGT CGCGCGCGGC ATGGGCAAGC CCTGTGTCTC CGGCTGCGGC
ACCATCCGCG TCGACTACGG CCGAGGCACA ATGAGCATCG GCGGGCGCAC CTTCAAGACC
GGCGACGTCA TCACCATCGA CGGCTCGGTC GGCCAGGTGC TGGCGGGACG CATGCCGATG
ATCGAGCCGG AGCTGTCTGG CGAGTTCGGT ACGCTGATGG GCTGGGCGGA TGCCGTGCGC
GAGACCGGCG TGCGCGTCAA TGCAGACACC CCGGAGGATG CGCGCACCGC GATCAAGTTC
GGCGCCGAGG GCATCGGCCT GTGCCGCACC GAGCACATGT TCTTCGAGGA GACGCGCATC
CGCACGGTGC GCGAGATGAT CCTCTCCGAG GAGGAGCAGG AGCGCCGCGC TGCGCTCGCC
AAGCTGTTGC CGATGCAGCG CGCCGACTTC GTCGAACTGT TCGAGATCAT GAAGGGCCTG
CCTGTCACGA TCCGCCTGCT CGATCCGCCG CTGCACGAGT TCCTGCCGCA CACCCAGGCC
GAGGTGGAGG AGGTCGCGCG CGCGATGAAC ACCGATCCGC GCCGGCTTGC GGACCGCGCC
CGCGAACTGT CGGAGTTCAA TCCGATGCTC GGTTTCCGCG GCTGCCGTCT TGCGATCGCC
TATCCGGAGA TCGCCGAGAT GCAGGCACGC GCGATCTTCG AGGCGGCCGT CGAGGCGGAG
AAACGCACCG GCGAGGCTGT CGGCCTCGAA GTGATGGTGC CGCTGATCGC CACCAAAGCC
GAGTTCGATC TGGTCAAGGC GCGCATCGAC GCGATGGCGC AGGCCGTCAT CCGCGAGACC
GGCGCCAAGC TGGAGTATCA GGTCGGCACC ATGATCGAGC TGCCGCGCGC AGCCCTGATG
GCGGGCCAGA TCGCGGAGGC CGCCGAGTTC TTCTCGTTCG GCACCAACGA TCTGACGCAG
ACCACCTACG GCATCAGCCG CGACGACGCC GGCAGCTTCC TCGGCGCCTA TGTCGCGAAG
GGCATCCTGG AGATCGATCC CTTCATCTCG ATCGATCGCG ACGGCGTCGG CGAACTGGTC
AAGATCGGCG TCGAGCGCGG CCGCGCCACG CGGCCCAACC TCAAGGTCGG CATCTGCGGC
GAGCATGGCG GCGATCCGGC CTCGGTCGCG TTCTGCCACA AGATCGGCAT GAACTACGTG
TCGTGCTCGC CCTATCGTGT GCCGATCGCG CGCCTCGCCG CCGCGCAGTC TGCGCTCGGC
AAGGAGATCG CCAGCCAAGC CTGA
|
|---|
| Protein sequence | MAKAVAKSKK VAAKSKPSKP GKAKAAPLAP PRKALKTAPK PAAKAPAKVA AKAAPKAPVK
TAPKKPAKTV AKPVGKPAKA SAAKPAAKSA ATAIKPNKWV YTFGDGKAEG KAGLRDLLGG
KGANLAEMAN LGLPVPPGFT IPTSVCTYFY ANDKTYPKEL QAQVDKALDY IGKLTDKTFG
DPENPLLVSV RSGARASMPG MMDTVLNLGL NDQTVEALAS LSGDRRFAFD SYRRFITMYS
DVVLGFEHHH FEDILDSFKD SQGYQLDTDL SSEDWEMLVG KYKEAVATET GKEFPQDPHD
QLWGAIGAVF SSWMNARAVT YRKLHDIPES WGTAVNVQAM VFGNMGDTSA TGVAFTRNPS
TGESKLYGEF LINAQGEDVV AGIRTPQDIT EDARIESGSD RASMEVAMPE AFKELTRIYT
LLEKHYRDMQ DMEFTVERGK LWMLQTRSGK RTAKAALRIA VELANEGLIS ENDAVLRVDP
ASLDQLLHPT IDPAAKRDVV ATGLPASPGA ASGEIVFSSD EATKLQADGR KVILVRIETS
PEDIHGMHAA EGILTTRGGM TSHAAVVARG MGKPCVSGCG TIRVDYGRGT MSIGGRTFKT
GDVITIDGSV GQVLAGRMPM IEPELSGEFG TLMGWADAVR ETGVRVNADT PEDARTAIKF
GAEGIGLCRT EHMFFEETRI RTVREMILSE EEQERRAALA KLLPMQRADF VELFEIMKGL
PVTIRLLDPP LHEFLPHTQA EVEEVARAMN TDPRRLADRA RELSEFNPML GFRGCRLAIA
YPEIAEMQAR AIFEAAVEAE KRTGEAVGLE VMVPLIATKA EFDLVKARID AMAQAVIRET
GAKLEYQVGT MIELPRAALM AGQIAEAAEF FSFGTNDLTQ TTYGISRDDA GSFLGAYVAK
GILEIDPFIS IDRDGVGELV KIGVERGRAT RPNLKVGICG EHGGDPASVA FCHKIGMNYV
SCSPYRVPIA RLAAAQSALG KEIASQA
|
|---|
| |