| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_2190 |
|---|
| Symbol | betA |
|---|
| ID | 5153489 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 2264373 |
|---|
| End bp | 2265998 |
|---|
| Gene Length | 1626 bp |
|---|
| Protein Length | 541 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640557122 |
|---|
| Product | choline dehydrogenase, a flavoprotein |
|---|
| Protein accession | YP_001238278 |
|---|
| Protein GI | 148253693 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGGCA GCGTGGCGTT ACGGGGGGCG GACCTGGAGT TCGACTACAT CGTGGTCGGG
GCCGGCTCGG CTGGCTGCGT GCTCGCCAAC CGCCTCAGCA AGGACGGCAA GCATACCGTG
CTGCTGCTCG AGGCGGGCCC GAAGGACACC AATATCTGGA TCCACGTCCC GCTCGGCTAC
GGCAAGCTGT TCAAGGACAA GACTGTCAAC TGGATGTACC AGACCGAGCC GGAGCCCGGG
CTCGGCGGCC GTTCCGTGTT TCAGCCGCGC GGCAAGGTGC TCGGCGGCTC CAGCTCGATC
AATGGTCTGC TCTATGTCCG CGGCCAGCAC GAGGACTATG ACCGCTGGCG GCAACGCGGC
AATGTCGGCT GGGGCTATGA CGACGTTCTG CCTTATTTCA AGCGGGCGGA AAATCAGTCG
CGCGGCGCCG ATGATTACCA TGGGGTCGGT GGCCCGCTCC CGGTGTCCGA CTGGAGGCAC
GAGGATCCGC TCTCGGAGGC GTTCGTCAAG GCAGCTGGCG AGACCGGTCT ACCGTTCAAT
GCCGATTTCA ACGGTGCAAG CCAGGAAGGC GCCGGCTTCT TCCAGACGAC GACACGGCAT
GGGCGGCGCG CCAGCAGCGC GGTATCCTAT CTGCGGCCGG CGCTCGGTCG CAGCAATCTT
CACGTGGAGA CCGACGCGCT GGCCCAGCGT ATCCTGTTCG ACGGCCGCCG CGCGTCCGGC
GTCACGTTCA GCCAGCGCGG CCGGCTGCGG ACGGCCCGTG CCCGCAGAGA AATTCTCGTA
TCGAGCGGCG CCTATAATTC GCCCCAACTG CTGCAGCTGT CCGGCGTCGG TCCGGCCGAT
CTCTTGAAGC AGCATGGCAT CGACGTCGTG CTCGATGCGC CAGGCGTCGG CAGCGACCTG
CAGGATCATC TGCAGGTGCG CATCGTGATG CGGTGCAGCC AGCGCATCAC GCTCAATGAT
ATTGTCAACA ATCCGGTGCG CAAGCTGCTC GCCGGCGCCC GCTATGCCGC CTTCCGCAAG
GGACCGCTGA CGATCGCGGC CGGCACCGCG GGCGCCTTCT TCAAGACCGA TCCGAGGCTG
GCGAGCCCGG ACATCCAGAT CCATTTCATC CCGTTCTCGA CGGACAAGAT GGGCGAAAAG
CTGCACGCCT TTTCCGGCTT CACGGCTTCG GTCTGCCAGT TGCGGCCGGA AAGCCGCGGC
TCGCTGCGGA TCAGGAGCGC CGACCCGGCG GCAGCCCCGG AAATCCGCAT CAATTATCTC
GCCAGCGAGA CCGACCGGCG CGCCAATATC GACGGCATCC GGATCCTGCG AAAAATCCTG
GCGGCGCCGG CCCTGAAGCC GTATGTCTCG GATGAAGCCT ATCCGGGGTC CAAGATCGTG
AGCGACGACG ATATCCTGGC CTATTGTCGG CAGACCGGCA GCACGATCTA TCATCCAACC
TCGACCTGCC GGATGGGGAC GGATGACTTG GCGGTGGTCG ATCAGCGTCT GCGGGTGCGT
GGCATCGATG GTCTGCGCGT CGTCGACGCC TCGATCATGC CGGATCTGGT TTCGGGCAAC
ACCAATGCGC CGGTCATCAT GATCGCGGAA AAAGCCTCCG ACATGATCTT GCAGGACGCG
CGCTGA
|
|---|
| Protein sequence | MEGSVALRGA DLEFDYIVVG AGSAGCVLAN RLSKDGKHTV LLLEAGPKDT NIWIHVPLGY
GKLFKDKTVN WMYQTEPEPG LGGRSVFQPR GKVLGGSSSI NGLLYVRGQH EDYDRWRQRG
NVGWGYDDVL PYFKRAENQS RGADDYHGVG GPLPVSDWRH EDPLSEAFVK AAGETGLPFN
ADFNGASQEG AGFFQTTTRH GRRASSAVSY LRPALGRSNL HVETDALAQR ILFDGRRASG
VTFSQRGRLR TARARREILV SSGAYNSPQL LQLSGVGPAD LLKQHGIDVV LDAPGVGSDL
QDHLQVRIVM RCSQRITLND IVNNPVRKLL AGARYAAFRK GPLTIAAGTA GAFFKTDPRL
ASPDIQIHFI PFSTDKMGEK LHAFSGFTAS VCQLRPESRG SLRIRSADPA AAPEIRINYL
ASETDRRANI DGIRILRKIL AAPALKPYVS DEAYPGSKIV SDDDILAYCR QTGSTIYHPT
STCRMGTDDL AVVDQRLRVR GIDGLRVVDA SIMPDLVSGN TNAPVIMIAE KASDMILQDA
R
|
|---|
| |