| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_2013 |
|---|
| Symbol | |
|---|
| ID | 5152963 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 2078603 |
|---|
| End bp | 2079970 |
|---|
| Gene Length | 1368 bp |
|---|
| Protein Length | 455 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640556954 |
|---|
| Product | PAS/PAC sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001238110 |
|---|
| Protein GI | 148253525 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAGG CCACGCACTC TCCTGAGGCC TCGGGGGCTG ATACGCTTCT CAAGCTGATC
GCGAGCAGCA GCACGCTGGA GCTCGACAGC GAGCGCGAGG GCGTGTGGAT CGAAGTCATC
CGCAAGATGG ACGAGGTCTA TTCCGACCTG CTGCGCTACG AGGTCGATCT CGAGCACAAG
AATGCGGAGC TCGAGGAGGC CCAGGCCTTC GTCACCAATG TCATCGAATC GGTTTCCGAC
ATCCTCGTCG TCTGCGACGC CAAGGGCACC GTCCAGCAGG CCAACTCCGC ATTCCTGCAG
ACCTCGGGAC GGAGCCTGGC TGATATCAGC GGCCGCAACA TCGCCGAGAT GATCGATCTG
CCGCACCGGA CGCAACTGCC GTCGCTGCTG AAGCCGCGCA GCAGCGCCGA GGTCGTCGAT
GGCGAGCTGC GGTTTGCCGC CGGCGGTTCA AGCTCCGACC TGTTCGCGAT CAACAGCTCG
CCGCGGCACG ACCACCGCGG CCGCTTCATC GGCGTGGTGC TGACCGGCCG TCCCATCGGC
GAGCTCCGCC GGGCCTATGA GGCGCTGCAC AAGGCGCATC AGGAGCTGCA GCGGGCGCAG
CGGCAATTGG TCGAGCAGGA GAAGATGGCG AGCCTCGGCC GGCTGGTGGC CGGCGTCGCC
CATGAGCTGA ACAATCCGAT CAGCTTCGTC TACGGCAACA TCCACACCTT GATGCGCTAC
CGCACCTCGC TGGTCGGCTA TCTCGATGCC GTGCATGAGC AGCCGGTGGC GGACGAGCTC
GCCGCGCTGC GCTCGGATCT CAGGATCGAC GCCATCCTCG AGGATTTCGG ACCCCTGATC
GAGGGCACGC TGGAAGGCGC GGTGCGGATC AGCGAGATCG TCAAGAACTT GCGCCGACTG
TCATTCTCCA AGCTCGGCGA GGTCGAGCGC GTCAATATCG AGCGGCTGAT CAACACCGCC
GTGCTGTGGG CAGGACGCAC CAAGCAGCAT CGCGTCGACA TCCAGATCGA GGTCGAGCCG
GATGTGTGGA TTTCCGGCAA TGAGGGCCAG TTGCATCAGG TGATCGTCAA TCTCGTGGAG
AACGCGATTG ACGCCATGCG GTCGACCGAA CAGCCACGTC TCCTCGTCGC GGCGGGGCGC
CAGGGCAACG AGATCGTGTT CAGAATCGCC GACAACGGAC CCGGCATCGA CCAGGACCAT
CTGAGCCATA TCTTCGAGCC GTTCTTCACC ACCAAGCGCG TCGGCGAGGG CACCGGCCTC
GGACTGTGGA TCAGCTATGG CATCGTCCGC GAGCATGGCG GCGAGCTGAT CGCGAGCAAT
GCGTCGGAGG GCGGCGCGAC CTTCTCTTTC GCTCTGCCGG CAGCGTAG
|
|---|
| Protein sequence | MAKATHSPEA SGADTLLKLI ASSSTLELDS EREGVWIEVI RKMDEVYSDL LRYEVDLEHK
NAELEEAQAF VTNVIESVSD ILVVCDAKGT VQQANSAFLQ TSGRSLADIS GRNIAEMIDL
PHRTQLPSLL KPRSSAEVVD GELRFAAGGS SSDLFAINSS PRHDHRGRFI GVVLTGRPIG
ELRRAYEALH KAHQELQRAQ RQLVEQEKMA SLGRLVAGVA HELNNPISFV YGNIHTLMRY
RTSLVGYLDA VHEQPVADEL AALRSDLRID AILEDFGPLI EGTLEGAVRI SEIVKNLRRL
SFSKLGEVER VNIERLINTA VLWAGRTKQH RVDIQIEVEP DVWISGNEGQ LHQVIVNLVE
NAIDAMRSTE QPRLLVAAGR QGNEIVFRIA DNGPGIDQDH LSHIFEPFFT TKRVGEGTGL
GLWISYGIVR EHGGELIASN ASEGGATFSF ALPAA
|
|---|
| |