| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_1994 |
|---|
| Symbol | hupU |
|---|
| ID | 5152128 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 2060592 |
|---|
| End bp | 2061608 |
|---|
| Gene Length | 1017 bp |
|---|
| Protein Length | 338 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640556935 |
|---|
| Product | uptake hydrogenase accessory |
|---|
| Protein accession | YP_001238091 |
|---|
| Protein GI | 148253506 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1740] Ni,Fe-hydrogenase I small subunit |
|---|
| TIGRFAM ID | [TIGR00391] hydrogenase (NiFe) small subunit (hydA) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCGGCG CGGAGGGAAT GACCAGGATG TTGTGGCTGC AGGGCGCGAG CTGCGGCGGC
TGCACCATGT CCATTCTGGA AAGCGGCGCC TCCGGCTGGT TCGACGAACT GCGCCAGTCC
GGCATCGATC TGGTGTGGCA TCCCTCCGTC AGCGAGGAGA CCGGCGAGGA AGCCGCGGAA
CTGCTCGAGG CCATCCGCGA CGGGCGCGAG CGGCTCGATC TGCTGGTGCT CGAAGGCTCG
GTCGCCCGGG GCCCTAACCT GAGCGGCCGC TTCAACATGC TGGCGGGCAC CAACCGCTCA
ATCTATCATT GGCTGCTCGA TCTCGCCCCG CTGGCCGACT ATGTCGTCGC GGTCGGCAGC
TGCGCGGCTT ATGGCGGCAT TCCCGCGGCC GGCATCAACC CGACCGATGC GGTCGGGTTG
CAGTTCGAGG GGAGCGACGT CGGCGGCGCG CTAGGGGCGG GTTTCCGCTC GAAGCGCGGG
TTGCCGGTGA TCAATGTCGC CGGCTGCGCG CCACACCCCG GCTGGATCAT GGAAAGCCTG
CTTGCGCTCA CGACTGGCGA TCTCACCGCC GACGGCCTCG ACGCCGTCGG GCGTCCCGCC
TTCATCGCCA ACCACCTCGC TCATCATGGC TGCTCGCGCA ACGAGTTCTA TGAGTTCAAG
GCGAGCGCGG AAGCCATGTC GGAGCGGGGC TGTTTGATGG AGCATCTCGG CTGCCGCGCG
ACGCAGGCTG TCGGCGACTG CAATCAGCGG TCCTGGAACG GTGGCGGCTC CTGCACCAAG
GGCGGCTATG CCTGCATCGC CTGCACCTCG CCTGGCTTCG AAAGCGCGCA GAACTATCTG
CAGACCGCGA AGCTCGCCGG CATTCCCGTC GGGCTTCCGA CCGACATGCC CAAGGCGTGG
TTCGTCGCGC TCGCGGCCCT GTCGAAATCG GCGACTCCGC GCCGCGTGCG CGTCAATGCC
ACGGCTGATC ACGTCGTGGT GCCGCCGAGC CGCTCGGGCG ACAAGCGCAG TTCATGA
|
|---|
| Protein sequence | MVGAEGMTRM LWLQGASCGG CTMSILESGA SGWFDELRQS GIDLVWHPSV SEETGEEAAE
LLEAIRDGRE RLDLLVLEGS VARGPNLSGR FNMLAGTNRS IYHWLLDLAP LADYVVAVGS
CAAYGGIPAA GINPTDAVGL QFEGSDVGGA LGAGFRSKRG LPVINVAGCA PHPGWIMESL
LALTTGDLTA DGLDAVGRPA FIANHLAHHG CSRNEFYEFK ASAEAMSERG CLMEHLGCRA
TQAVGDCNQR SWNGGGSCTK GGYACIACTS PGFESAQNYL QTAKLAGIPV GLPTDMPKAW
FVALAALSKS ATPRRVRVNA TADHVVVPPS RSGDKRSS
|
|---|
| |