| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_1972 |
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| Symbol | |
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| ID | 5152120 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | + |
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| Start bp | 2037337 |
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| End bp | 2038713 |
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| Gene Length | 1377 bp |
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| Protein Length | 458 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640556914 |
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| Product | putative multi anti extrusion protein (MatE) |
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| Protein accession | YP_001238070 |
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| Protein GI | 148253485 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.84525 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.887527 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCCGAGC CGGTCGCGGC AGCTCCAGCG AAATCGCACC GGCCACCGCC GTCGCTGTGG
TGGCCCATCC TGCGCTTCGC CCTTCCGCAA GGGGCCAGTG CGGCATTGCA ACTGCTGTCG
GGAACGGTGA CCGCGGTTTA TTTCGGCCAG CTCCTCGGCG TGTCCGCACT CGCCGCGGCA
TCGGTGTTCT TTCCGGTCTT CTTTCTCCTG ATATCGTTCC TGATCGGCCT GATTTCAGGC
GGCATCGTTC TTGTCGCGCG CGCTTACGGC GCCGGTGACA TGCTGGCGGT CAAGGATGTC
GCCGGAACGA CGCTCTGTGC CAGCGTCTCG CTCAGTCTCG TCATGTCGAT CATCGGCTAC
GCATTTGTCC CGGAACTCCT TGGTGTCATG TCGACGCCGG CCGACATTCT CGCGTCGGCG
ATCGACTATG CGCGGATCAC ATTCGTATCC CTGCCAGCGC AGATCATCCT GCTCTCCTAT
GTCTTTCTGC TCAGAGGGAC GGGAGATGCG AAGACGCCGT TCATCCTGAT GGCCGTCTTC
TTCGGCATTT CCCTGCTGCT GATGCCCGCC TTGATCCTGG GGTGGGGCGG TCTGCCCAAA
CTCGGCGTGA CCAGCGCGCC ATGGGCCAGC ATCGGGGCCA CCGCGATCTC GCTGCCCGGA
CTGATCCTGT ATCTGCGCCG GAAGCAGCAT CCGCTGGTCC TCGACGGCGA ACTGATCCGG
CGGCTGCGGA TCAATCGCGA GGTGATCCGA CCGTTTCTGG TGATCGGCAT TGCCGGTGGC
ATCCAGGCCA CGGTGGCGTC GCTGGCCGAG GTGGCGGTCG TCACGCTGGT GAATTCGTTC
GGATCGAACG CCACCGCGGC CTATGGCGCC ATCAACCAGG TGATCGGATA TCTGGTCGTG
CCGATGCAGG CGGTGGGGCT CGCGGCGAGC GTGATGGCGG CGCAGGCGAT CGGAGCAAAG
CGGCTTGGCC AGCCGCACCT CATCGCGCAA ATCGCGGCGA TCATGAATGT CCTGATCGGC
GCGGTGAGCG TGGCGGGGCT GCTCGGCTTC GCGGACGGCA TCCTGTCCTG GTTTGTCACC
GACGCCACGA CGTCGGCAGT CGCGGAGCGA GCCCTGCGCA TGATGCTGTG GAGCTACATC
CTGACCGGCA TCTCGGACGT GCTCGCAGGC GTGATGCGCG CGTCAGGTAC GGTGGCGTGG
CCGACCCTGA TCTCGCTGGG CGGGATTTGG CTGGTGCAGG TCCCCGTCGC GTATCTGCTG
GCCGGAACAG CCGGGTTGGA TGGCGTCTGG ATGGGCTATT CTGCCGGCTT TCTCGCGGCG
CTCCTCGCCC AATCGGCGTA TTACGGCCTG GTCTGGCGGT CCCGCAAGAT CGGGTGA
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| Protein sequence | MPEPVAAAPA KSHRPPPSLW WPILRFALPQ GASAALQLLS GTVTAVYFGQ LLGVSALAAA
SVFFPVFFLL ISFLIGLISG GIVLVARAYG AGDMLAVKDV AGTTLCASVS LSLVMSIIGY
AFVPELLGVM STPADILASA IDYARITFVS LPAQIILLSY VFLLRGTGDA KTPFILMAVF
FGISLLLMPA LILGWGGLPK LGVTSAPWAS IGATAISLPG LILYLRRKQH PLVLDGELIR
RLRINREVIR PFLVIGIAGG IQATVASLAE VAVVTLVNSF GSNATAAYGA INQVIGYLVV
PMQAVGLAAS VMAAQAIGAK RLGQPHLIAQ IAAIMNVLIG AVSVAGLLGF ADGILSWFVT
DATTSAVAER ALRMMLWSYI LTGISDVLAG VMRASGTVAW PTLISLGGIW LVQVPVAYLL
AGTAGLDGVW MGYSAGFLAA LLAQSAYYGL VWRSRKIG
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