| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_1955 |
|---|
| Symbol | |
|---|
| ID | 5149397 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 2020513 |
|---|
| End bp | 2021661 |
|---|
| Gene Length | 1149 bp |
|---|
| Protein Length | 382 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640556898 |
|---|
| Product | putative branched-chain amino acid ABC transporter, permease protein |
|---|
| Protein accession | YP_001238054 |
|---|
| Protein GI | 148253469 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR03408] urea ABC transporter, permease protein UrtC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGTCGA AGCGCCGCAT CGACTGGGCG ATCTACGCCG CCTTCATCGT CCTGATCATG
CTCGTGCCGC TGATCATGGA CTCGTTCTGG CTCAACCGTC TCGCCAAATA TCTCGTGTTC
GGGATGCTGG GCATCGCCGT GGCGCTGTCC TGGGGCTATG CGGGCATTCT CAACCTGGGG
CAGGGCCTGT TCTTCGGCGC CGGCGCCTAC ATGCTGGCGA TGTCGCTGAA GCTCGCGAGC
TCCACCAGCC TGCAGCAGGG CTCGGACAAG CCCGTGCCGG ACTTCATGCT GTGGAACGCG
GAGCCCGGCG CCAAGACCGA GCTGTGCTGC ATCAACAAGG CGTCGTTTCT CTGGTTGCCG
TTCCAGAGTC AATGGTTCGG CGTCGCCATG GGGCTGATCC TGCCGGTCGC CATCGCCTTC
GTGCTCGGCT CGATCGTGTT CCGCAAGCGC ATCGCCGGCG TCTTCGTCTC GATCATCACG
CTGGCGCTGG TGCTGCTGGT CCGGCTCGTG ATGATCGACG CCCAGCCGGT GACCAACGGC
TTCAACGGCC TCACCGATCT CGGCTGGTTC AAGCTCGGCG GCTTCGAGTT CGATCCCTAT
GTGGTGCCGA CTTATTACCT GATCGCCGTC TCGCTCAGCG TCGTGCTGAT CGCAGCGCGG
CTGCTGGTCG AGACCAGGGC AGGGGTCATC CTGCAGGCGA TCCGCGACGA TCAGAACCGC
GCGCGCTATC TCGGCTTCGA TGTACCGGCC TACCAGACCT TCTTCTTCGC GGTGTCGGCG
CTGATCGCGG GCTTCGCGGG CATGCTCTAT GTCATCGTCT CGGAGTTCGC TTCGCCGACC
TTCATGGATC TGAGCTTCTC GATCACCATG GTGGTATGGG CGGCGGTCGG CGGCCGCGCC
TCGATCCTGG GCGCCTGTAT CGGTGCGATC CTGATCAACA TGATCTCGGC AACCGTCAGC
GAAACCGAAG GCTTCGCGGA AGCGTGGAAG GCGATCATCG GCCTGATCTT CGTGCTGGTC
GTGCTCTACA TGCCGCGCGG CATCGCCGGT CTCGCTCATG ACCTGATCGA TCGGTTCATC
ACCCGGAGGC CGTCGACGCC GGCGCCGGCG GTGCGCGTCA ACGATCCATC CTCGCAGCCG
GCGGAGTAG
|
|---|
| Protein sequence | MMSKRRIDWA IYAAFIVLIM LVPLIMDSFW LNRLAKYLVF GMLGIAVALS WGYAGILNLG
QGLFFGAGAY MLAMSLKLAS STSLQQGSDK PVPDFMLWNA EPGAKTELCC INKASFLWLP
FQSQWFGVAM GLILPVAIAF VLGSIVFRKR IAGVFVSIIT LALVLLVRLV MIDAQPVTNG
FNGLTDLGWF KLGGFEFDPY VVPTYYLIAV SLSVVLIAAR LLVETRAGVI LQAIRDDQNR
ARYLGFDVPA YQTFFFAVSA LIAGFAGMLY VIVSEFASPT FMDLSFSITM VVWAAVGGRA
SILGACIGAI LINMISATVS ETEGFAEAWK AIIGLIFVLV VLYMPRGIAG LAHDLIDRFI
TRRPSTPAPA VRVNDPSSQP AE
|
|---|
| |