| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_1949 |
|---|
| Symbol | soxB |
|---|
| ID | 5151720 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | - |
|---|
| Start bp | 2013759 |
|---|
| End bp | 2015009 |
|---|
| Gene Length | 1251 bp |
|---|
| Protein Length | 416 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640556892 |
|---|
| Product | sarcosine oxidase, beta subunit |
|---|
| Protein accession | YP_001238048 |
|---|
| Protein GI | 148253463 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | [TIGR01373] sarcosine oxidase, beta subunit family, heterotetrameric form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.572623 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCTATT CGCTGTTCTC TCTCGCCCGC CAAGCCCTGC GCGGCCATCG CGACTGGCAG
CCGGTCTGGC GCGATGCCGC CCCGCAAGCG AGCTACGACA TCATCATCGT CGGCGGCGGC
GGCCATGGGC TGGCCACCGC CTATTACCTC GCCAAGGAGC ACGGCATTCG CAAAATTGCC
GTGCTCGAAA AAGGCTGGAT CGGCTCCGGC AATGCCGGCC GCAACACCAC GATCATCCGC
TCCAATTATC TGCTGCCCGG CAACGAGCCG TTCTACGAAT GGTCGATGAA GCTGTGGGAG
GGCCTGGAGC AGGACCTGAA CTACAACACC ATGGTCAGCC AGCGCGGCGT GCTGAACCTC
TATCATTCCG ACGCGCAGCG CGATGCGTTT GCCCGGCGCG GCAATGCGAT GCGGCTGGCG
GGCGCCGATG CCGAGCTGCT CGATGCCGAC GCCGTCAGGC GCATGCTGCC ATTTCTCGAT
TTTGACAATG CGCGCTTTCC GATCAAGGGC GGCCTGCTGC AGCGGCGCGG CGGCACCGCG
CGGCACGATG CGGTCGTCTG GGGCTACGCC CGCGGCGCCA GCGCGCGTGG CGTCGACATC
ATCCAGAACT GCGAGGTCAC CGGCTTCGTG CGTGACGGCG ATCGCATCAC CGGGGTCACC
ACGACGCGCG GCACGATCCA GGCCGGCAAG GTCGGGCTTG CGGTTGCCGG CAGCAGCTCG
CGGGTCGCGG AGTATGCCGG CCTGCGGCTG CCGATCGAAA GCCACGTGCT GCAGGCCTTC
GTCTCCGAAG CCATCAAGCC GCTGATCCCC GGCGTGGTCA CCTTCGGCGC CGGTCATTTC
TACATCAGCC AGTCCGACAA AGGCGGGCTC GTCTTCGGCG GCGATATCGA CGGCTACAAT
TCCTATGCGC AGCGCGGCAA TCTGCCGACC GTGGAGGACG TCTGTGAGGG CGGCATGGCG
CTGATGCCGG CGATCGGCCG CGTGCGCATG CTGCGCTCCT GGGGCGGGCT CGTCGACATG
TCGATGGACG GCTCGCCGAT CATCGACCGC ACGCCGCTGC AAGGACTCTA TCTCAACGCC
GGCTGGTGCT ATGGCGGCTT CAAGGCCACG CCGGGCTCCG GCTGGTGCTT CGCGCATCTG
CTGGCGCGCG ATGAGCCGCA TCCGGTCGCG AGCGCCTATC GCCTCGACCG TTTCGCAACC
GGCCACCTGA TCGACGAAAA AGGTCAGGGC GCGCAGCCAA ATCTGCACTG A
|
|---|
| Protein sequence | MRYSLFSLAR QALRGHRDWQ PVWRDAAPQA SYDIIIVGGG GHGLATAYYL AKEHGIRKIA
VLEKGWIGSG NAGRNTTIIR SNYLLPGNEP FYEWSMKLWE GLEQDLNYNT MVSQRGVLNL
YHSDAQRDAF ARRGNAMRLA GADAELLDAD AVRRMLPFLD FDNARFPIKG GLLQRRGGTA
RHDAVVWGYA RGASARGVDI IQNCEVTGFV RDGDRITGVT TTRGTIQAGK VGLAVAGSSS
RVAEYAGLRL PIESHVLQAF VSEAIKPLIP GVVTFGAGHF YISQSDKGGL VFGGDIDGYN
SYAQRGNLPT VEDVCEGGMA LMPAIGRVRM LRSWGGLVDM SMDGSPIIDR TPLQGLYLNA
GWCYGGFKAT PGSGWCFAHL LARDEPHPVA SAYRLDRFAT GHLIDEKGQG AQPNLH
|
|---|
| |