| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_1876 |
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| Symbol | fliF |
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| ID | 5148977 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | - |
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| Start bp | 1944324 |
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| End bp | 1945931 |
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| Gene Length | 1608 bp |
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| Protein Length | 535 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640556828 |
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| Product | flagellar MS-ring protein |
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| Protein accession | YP_001237985 |
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| Protein GI | 148253400 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
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| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.518241 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCAAGGTC TCTTGGACTT CCTGAAGGGT TTGGGCGCCG CGCGGCTCAC CGCCATGATC
GCGGTCACTG CCGCTTTGAT CGGCTTCTTC GGCTTCGTCA TCATGCGGGT GACGGCGCCC
CAGATGACGA CCCTGTTCAC CGACCTCGGC ATGGACGACT CCTCCAGCAT CATCAAGGAT
CTGGAGCGGC AGGGCATTCC GTTCGAGATC CGCAATGAAG GCAGCGTGAT CCTGGTCCCG
AAGGACAAGG TGACGCGGCT GCGGATGAAG CTCGCCGAAG GCGGCCTGCC CAAGGGCGGC
GGCGTCGGTT ACGAGATCTT CGACAAATCG GACGCGCTGG GCACCACGAG CTTCGTCCAG
AACATCAACC ATCTGCGCGC GCTGGAAGGC GAGCTCGCCC GCACCATCCG CGCCATCGAC
CGCATCCAGG CGGCCCGCGT CCACCTCGTT CTGCCCGAGC GGCCGCTGTT CTCGCGCGAG
ACGCCGGAGC CGTCGGCCTC GATCGTGGTC CGCGTGCGCG GCGCCCTCGA TGCCGCTCAG
ATCCGCGCCA TTCGCCACCT CGTCGCCTCA GCGGTCAACG GCCTGAAGCC GCAGCGTGTC
TCGATCGTCG ACGAAGCCGG ACAATTGCTC GCCGACGGCA CCCAGACCGA CATCGACCAG
CAGGTCGGCG ACGAGCGCCG CAACACGTTC GAAAAGCGGA TGCGCAAGCA GGTCGAGGAC
ATCGTCTCCT CGGTGGTCGG CGCCGGCCGT GCCCGCGTCC AGCTCTCCGC CGATTTCGAC
TTCAACCGCA TCACTCAGAC CTCCGATCGC TACGATCCGG AAGGCCGCGT GCTCCGGTCG
AGCCAGACCC GTGAAGAGCA GTCGGCCAGT TCGGAAAGCA ACGGCCAGGT CACGGTCAAC
AACGAGCTGC CGGGCAACCA GCAGAACCAG CAGCAGCAAC AGCCGCCGCG CGATCAGAGC
AAGAAGACCG AAGAGACCAA CAATTATGAG ATTTCCCGGA CCACCAAGAC CGAAGTGACC
GAAGCCGGCC GTGTGAACCG AATCTCGGTC GCGGTCCTGG TCGATGGCGC CTACTCCAAG
AACGAGAAGG GCGAGCTGGT CTACAAGGAG CGCAGCAAGG AGGAGCTCGA TCGCATTGCG
GCTCTGGTCC GCTCCGCCAT CGGCTTCGAC CAGAAGCGCG GCGATCAGGT CGAGGTGGTC
AACCTGAAAT TCGCCGATGC ACCGACGGTC CCGCAGATCA ACGAGCCCAG CGGCTTCCTC
GGAATGCTCC AATTCACCAA GGATGACGTC ATGTACGTCA TCGAGCTCGC CGTGATGATG
CTGCTCGGCA TTGTCGTAGT GTTCATGGTG GTCCGGCCGC TGGTGAAGAA GATCATCGCC
TCCGACGAGG TCGCGGCAGC CCTGAAGAGC GCAGTCCCCG CCCTCACCGA CGAGACCGCT
CAGGCGCAGG CCCACGCCCA GCAGACCGCA ACCCTGATCG ACGTCGCTCA GGTCCAAGGA
CAGGTCCACG CCCAGTCGGT GCACCGGGTG GGCGAACTGG CCGACCGCAA TCCGGGCGAA
GCCGCCGCCA TCATCCGCCA GTGGCTCGCC GAGCCGCAGC AGCAATGA
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| Protein sequence | MQGLLDFLKG LGAARLTAMI AVTAALIGFF GFVIMRVTAP QMTTLFTDLG MDDSSSIIKD
LERQGIPFEI RNEGSVILVP KDKVTRLRMK LAEGGLPKGG GVGYEIFDKS DALGTTSFVQ
NINHLRALEG ELARTIRAID RIQAARVHLV LPERPLFSRE TPEPSASIVV RVRGALDAAQ
IRAIRHLVAS AVNGLKPQRV SIVDEAGQLL ADGTQTDIDQ QVGDERRNTF EKRMRKQVED
IVSSVVGAGR ARVQLSADFD FNRITQTSDR YDPEGRVLRS SQTREEQSAS SESNGQVTVN
NELPGNQQNQ QQQQPPRDQS KKTEETNNYE ISRTTKTEVT EAGRVNRISV AVLVDGAYSK
NEKGELVYKE RSKEELDRIA ALVRSAIGFD QKRGDQVEVV NLKFADAPTV PQINEPSGFL
GMLQFTKDDV MYVIELAVMM LLGIVVVFMV VRPLVKKIIA SDEVAAALKS AVPALTDETA
QAQAHAQQTA TLIDVAQVQG QVHAQSVHRV GELADRNPGE AAAIIRQWLA EPQQQ
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