| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_1849 |
|---|
| Symbol | lolD |
|---|
| ID | 5151793 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 1920449 |
|---|
| End bp | 1921153 |
|---|
| Gene Length | 705 bp |
|---|
| Protein Length | 234 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640556801 |
|---|
| Product | lipoprotein-releasing system (ABC transporter), ATP-binding protein lolD |
|---|
| Protein accession | YP_001237958 |
|---|
| Protein GI | 148253373 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.115729 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCTGAGG ACATCCTGCG CCTGGAGAAG GTGTGCAAGG CCTATAACGT CGGCCAGCCG
ACCGAGACCG AGGTGCTGCA TGACATCGAC CTCGAGGTCG ATCGCGGCGA GTTCGTCGCG
CTGATTGGTC CGTCCGGCTC CGGCAAGAGC ACCCTTCTCA ATATCGTCGG CCTGCTCGAC
CGGCCGACCT CCGGCCGGCT GACGATCAAG GGTCAGGATA CGGCGGTGCT CGGTGATACC
GAACTCACTC ATCTGCGGGG GCACACCATC GGCTTCATCT TCCAATCTCA TCTCCTGATC
TCGGCCTTCA CGGCCAAGGA GAATGTGATG ATGCCCCTCC TGGTCGATCG CGGCTTCCCC
AGTCCCGAGA TCGAGGCCCA GGCCTCGCGC CTGCTGGACC AGGTCGGCCT CGCCAAATTC
GCCAACCATC TCGTGAGCAA CATGTCGGGT GGTCAGCAGC AGCGGGTCGC GGTGGCCAGG
GCGCTGGCCA TGAATCCCGA TCTGGTTCTG GCGGACGAGC CCACCGGCAA TCTCGACACC
AAATCCGCAG AAGCGGTCTT CGGGCTGATG CGGGAGGTCA ATCGCGCGGT CGGCACCAGC
TTTCTGCTGG TCACCCACAA CCTCGACCTG GCACGGCGCT GTGATCGCAT CATCGAGGTT
GTCGATGGCC GGATCCAGCC TGACGGCGCG CCGCTTCGAT CGTAG
|
|---|
| Protein sequence | MAEDILRLEK VCKAYNVGQP TETEVLHDID LEVDRGEFVA LIGPSGSGKS TLLNIVGLLD
RPTSGRLTIK GQDTAVLGDT ELTHLRGHTI GFIFQSHLLI SAFTAKENVM MPLLVDRGFP
SPEIEAQASR LLDQVGLAKF ANHLVSNMSG GQQQRVAVAR ALAMNPDLVL ADEPTGNLDT
KSAEAVFGLM REVNRAVGTS FLLVTHNLDL ARRCDRIIEV VDGRIQPDGA PLRS
|
|---|
| |