Gene BBta_1662 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBBta_1662 
SymbolglcD 
ID5154133 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBradyrhizobium sp. BTAi1 
KingdomBacteria 
Replicon accessionNC_009485 
Strand
Start bp1733510 
End bp1735003 
Gene Length1494 bp 
Protein Length497 aa 
Translation table11 
GC content65% 
IMG OID640556620 
Productglycolate oxidase, subunit GlcD 
Protein accessionYP_001237778 
Protein GI148253193 
COG category[C] Energy production and conversion 
COG ID[COG0277] FAD/FMN-containing dehydrogenases 
TIGRFAM ID[TIGR00387] glycolate oxidase, subunit GlcD 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGATCA TGATGCCGGA AGCTGATCAG GCGGTGTTGG CACGGCGTGA CCAGATCGTT 
GCTGCACTGC GTGCGATCGT ACCGGGAGAG GGCGTCATCG ACAGCGCTGC CGAAATGCTC
CCTTACGAGT CTGACGGGTT GATGGCCTAT CGGCAGCCGC CGATGGTCGT GGTGCTGCCG
GAGACCACGG CACAGGTGGC CAAGGTCCTG AAGTACTGCC ACGAGCAAGG CATCAAGGTG
GTTCCCCGCG GCTCGGGAAC GTCACTGTCG GGCGGCGCGC TGCCGCTCGC CGACGGCGTG
CTGCTCGGGC TTGGCAAGTT CAAGCGGATC CGCGAGATCG ACTTCGACAA CCGCGTCGTC
GTGACCGAGC CCGGCGTCAC CAACCTCGCC ATCAGCCAGG CGGTCGCGCA TGCCGGCTTC
TACTACGCGC CCGATCCGTC CTCGCAGATC GCCTGCTCGA TCGGTGGCAA TGTCGCGGAG
AATTCCGGCG GCGTGCATTG CCTCAAATAC GGCATGACCA CCAATAACGT GCTCGGTTGC
GAGATCGTGC TGATCAATGG CGAGGTGTTG CGGATCGGAG GCAAGTGCGC CGAGAACGCC
GGCTACGATC TGATGGGGCT GATCACGGGA TCCGAGGGGC TGCTCGGCGT GGTCACCGAG
GTGACCGTCC GGATTCTGCA GAAGCCGGAG ACGGCGCGGG CGCTGATGGT CGGGTTTTCC
GAGGTCGAAG CTGCCGGCGA ATGCGTGGCG CGCATCATCG GAGCCGGCAT CATCCCCGGC
GGCATGGAGA TGATGGACAA GCCTGCGATC CACGCCGCCG AGGCCTTCGT TCATGCCGGC
TATCCGCTGG ACGTGGAGGC GCTCTTGATC ATCGAGCTCG ATGGCCCCGG CGTGGAGGTC
GACGAACTGA TCGGCCGCGT CGAGGCGATC GCCAATGGCT GCGGCTCGAC GACATGTCGC
ATCTCGACCT CCGAGGCCGA GCGCAACTTG TTCTGGGCAG GGCGCAAGGC CGCCTTTCCG
GCCGTCGGCC GGATCTCGCC GGACTATCTT TGCATGGACG GCACGATCCC GCGCGGCGCA
TTGCCGAAGG CGCTGGCGCG GATCCGCGAG CTGTCGGAGA AGTACCAGCT CGGCTGCGCC
AATGTGTTTC ATGCCGGCGA TGGCAATCTT CACCCGCTCA TTCTTTACGA CGCCAATAAG
CCTGGCGAAA TGGAGCGCGC CGAGGCGTTC GGCGCCGACA TCCTGCGCTG TTGCGTCGAG
CTCGGCGGCG TTCTGACCGG CGAGCATGGC GTCGGCATCG AGAAGCGCGA CCTGATGCCG
GACATGTTCA CCGAGATCGA CCTGAACCAG CAACAGCGCG TGAAATGCGC CTTCGACAGC
CAGGGCCTGC TCAATCCCGG CAAGGTCTTC CCCACGCTGC ATCGCTGCGC CGAGCTCGGG
CGCATGCACG TTCATGGCGG CCGGCTCGCC TTTCCCGACC TGCCCAGGTT CTGA
 
Protein sequence
MAIMMPEADQ AVLARRDQIV AALRAIVPGE GVIDSAAEML PYESDGLMAY RQPPMVVVLP 
ETTAQVAKVL KYCHEQGIKV VPRGSGTSLS GGALPLADGV LLGLGKFKRI REIDFDNRVV
VTEPGVTNLA ISQAVAHAGF YYAPDPSSQI ACSIGGNVAE NSGGVHCLKY GMTTNNVLGC
EIVLINGEVL RIGGKCAENA GYDLMGLITG SEGLLGVVTE VTVRILQKPE TARALMVGFS
EVEAAGECVA RIIGAGIIPG GMEMMDKPAI HAAEAFVHAG YPLDVEALLI IELDGPGVEV
DELIGRVEAI ANGCGSTTCR ISTSEAERNL FWAGRKAAFP AVGRISPDYL CMDGTIPRGA
LPKALARIRE LSEKYQLGCA NVFHAGDGNL HPLILYDANK PGEMERAEAF GADILRCCVE
LGGVLTGEHG VGIEKRDLMP DMFTEIDLNQ QQRVKCAFDS QGLLNPGKVF PTLHRCAELG
RMHVHGGRLA FPDLPRF