| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_1544 |
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| Symbol | |
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| ID | 5152560 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | - |
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| Start bp | 1623788 |
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| End bp | 1625419 |
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| Gene Length | 1632 bp |
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| Protein Length | 543 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640556508 |
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| Product | putative outer membrane lipoprotein (NodT-like), RND efflux system |
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| Protein accession | YP_001237666 |
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| Protein GI | 148253081 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.280658 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.243033 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGACCGG GACCAAAAGC CCTTCGCTGT TCGGAAATGA TCGGGGTTGG AATGCTTAGG
TATCGTTCGG TGTTCGCGGC ATCCTGCGCG GCGCTGCTAC TGTCGAGCTG CGCGGTTGGA
CCGAAGTTCT CGTCGCCGCC GACGCCGGAT GTCGCGCGCT ATACACCCGA GCTGCTGTCC
TCGCCCCACT CCAGCCCGGA GTCGCCAGGG ATCGCCGGCC AGCGATTCAT CGAAGGGGGC
GATATTCCGA CCCGTTGGTG GGCGGCGTTT CGCTCGCAGC CGCTCAACGA CCTGATTAGG
CTTGCTGTCG ACCACAGTCC GACGCTGCAG GCCTCGGAAG CGGCGATCCG GGTAGCGAAC
TACAACGCAC TTGCCCAGCG CGGCTTGTTC TTCCCGCAGA TCAGCGGCAG TTCTGGCCCC
TCACAAACCC TCCTGACGAA CGCCGGAACC GTTTTCGGAG TCCCTCTCGA TTCGGTGCCG
CAGACTCGAT ACTCGCTGGT GACCCATCAG GTGACCGTTA GCTTCCTGCC GGATGTCTGG
GGCGCTAACA TCCGGGCCGT GGAAAACCTG GATGCGCTGA CCGAGCAGGC CCACTTCCAG
CTCGAGGCCG CCCACCTGGC GCTTACCGCC AACGTCGTCA CTGCAGCCAT TCAGGAGGCT
TCGCTGCGCG GCCAGATCGA GGGAATCGAG CAGGTCATAA AGGTTGTGCG CGAGATACTC
GAGCTCCTGA AGAAGCAATT CAATGCCGGC CAGGCTGCGC AGACCGACGT GCTGACACAG
GAGGCGGCGC TCGCTCAGGT GGAGCAGACC CTGCTGCCCC TAAGGAAGCA ACTCGCGGTA
CAACGAGACC TGTTGACGGC ACTTGCCGGC CAGTTTTCCG CCGACGAGGT TCTCCAGAAG
TTCGATCTGA AACACATCGC ATTGCCGAGA AACCTGCCGG TGAGCTTGCC GAGCACGCTT
GTGCGCCAGC GGCCAGACGT CAGGGCCGCG GAAGCGGCAA TGCATGCGGC AAGCGCACAG
GTCGGGGTTG CGATCGCCGC CCGTCTGCCT AGCTTCCCGT TGTCCGCGAA TGGCGGATCG
ACCGGCTACA ACTTCGCCCA GAGCTTTACC CCAGGCACAG GATTTTACGT GTTGGCTGCG
AGTGTCACCG GCCCGATCTT CGATGGGTTT ACGCTGTACC ACAAGCAGAA GTCGGCCGAG
GCCGCGCTTG ACCAGGCCGA TGCGCTGTAT CGCCAGACCG TCATCACGGC GTTCCAGAAC
GTCGCAGACG CTCTGCGCAG CCTCCAGCAG GACACACCGG CGGTGCAGGC CGCTATCAAG
TCGGAAATGG CCACAAAGAA AAGCCTCGAT CTGATCAGAA AGCAGCTTGT CCTAGGTCTG
GTCAATCAGG CAACGGTATT AACGGCCCAG CAAGCGTATC TCTCCGCCGT GATTGCGCGA
GTTCAGGCGG AAGCCACACG ACTTTCGGAT GTCGCAGCCT TGTTTATGGC GCTGGGCGGC
GGCTGGCCAA CCAACTGCCC CACCACCGAC TGGCGCGCCT GCGTGTTTGA CGCGGTCCAG
CTGCCCAAGG CTGAAATGCC GAAAGCCGAA ATACCCAACC CCGAAATGCC CAAAGACACC
ACCAAGTCAT GA
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| Protein sequence | MGPGPKALRC SEMIGVGMLR YRSVFAASCA ALLLSSCAVG PKFSSPPTPD VARYTPELLS
SPHSSPESPG IAGQRFIEGG DIPTRWWAAF RSQPLNDLIR LAVDHSPTLQ ASEAAIRVAN
YNALAQRGLF FPQISGSSGP SQTLLTNAGT VFGVPLDSVP QTRYSLVTHQ VTVSFLPDVW
GANIRAVENL DALTEQAHFQ LEAAHLALTA NVVTAAIQEA SLRGQIEGIE QVIKVVREIL
ELLKKQFNAG QAAQTDVLTQ EAALAQVEQT LLPLRKQLAV QRDLLTALAG QFSADEVLQK
FDLKHIALPR NLPVSLPSTL VRQRPDVRAA EAAMHAASAQ VGVAIAARLP SFPLSANGGS
TGYNFAQSFT PGTGFYVLAA SVTGPIFDGF TLYHKQKSAE AALDQADALY RQTVITAFQN
VADALRSLQQ DTPAVQAAIK SEMATKKSLD LIRKQLVLGL VNQATVLTAQ QAYLSAVIAR
VQAEATRLSD VAALFMALGG GWPTNCPTTD WRACVFDAVQ LPKAEMPKAE IPNPEMPKDT
TKS
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