Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BBta_1506 |
Symbol | |
ID | 5151936 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bradyrhizobium sp. BTAi1 |
Kingdom | Bacteria |
Replicon accession | NC_009485 |
Strand | + |
Start bp | 1594404 |
End bp | 1595087 |
Gene Length | 684 bp |
Protein Length | 227 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640556473 |
Product | conjugal transfer protein TrbF |
Protein accession | YP_001237631 |
Protein GI | 148253046 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3701] Type IV secretory pathway, TrbF components |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 0.50681 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTTCAAGC GGCCATCCGT GCACTACGGC AGCACGCCGC AGCCCGTAAC GCCCTATCAG AAGGCAGCAC AAGTCTGGGA TGAGCGGATT GGTTCGGCCC GGGTCCAAGC CAGGAACTGG CGGTTGATGG CATTTGGATG CCTGTTGCTG TCCGGCGGGC TCGCCGCGGC TCTCGTCTGG GAATCCACCC AAGGCACGAT CACTCCGTGG GTCGTGCAGG TTGATCATCT CGGCCAGGCC CAGGCGGTTG CGCCGGCAAG TTCCTCCTAT CAGCCGACTG ATCCGCAAAT TGCGTTTCAT CTCGCGCGGT TTATCGAGGA TGTACGGGGC TTGCCGACCG ACGCCATCGT GCTGCGGCAG GACTGGCTCA GAGCCTACGA TTTCACGACC GATCGTGGCG CCGCCGCGTT GAACGATTAC GCCCGAACGA ACGATCCCTT TGTCAAGCTC GGCAACACCC AGGTCGCGGT CGAGATTTCC AGCGTCATCC GCGCCTCACC GCAAAGCTTT CGAGTGGCAT GGACCGAGCG CCGTTACGAC AGCGGCCAGC TCGCTGCGAC CGAGCGCTGG ACCGCGATCC TTTCCGTGAT CATCGAAACC CCGCGCGACA CCGATCGCCT GCGCAAGAAT CCGCTTGGCG TTTATGTCAA TTCCATCAAC TGGTCGAAGG AGCTTGGCCA GTGA
|
Protein sequence | MFKRPSVHYG STPQPVTPYQ KAAQVWDERI GSARVQARNW RLMAFGCLLL SGGLAAALVW ESTQGTITPW VVQVDHLGQA QAVAPASSSY QPTDPQIAFH LARFIEDVRG LPTDAIVLRQ DWLRAYDFTT DRGAAALNDY ARTNDPFVKL GNTQVAVEIS SVIRASPQSF RVAWTERRYD SGQLAATERW TAILSVIIET PRDTDRLRKN PLGVYVNSIN WSKELGQ
|
| |