Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BBta_1503 |
Symbol | trbE |
ID | 5151852 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bradyrhizobium sp. BTAi1 |
Kingdom | Bacteria |
Replicon accession | NC_009485 |
Strand | + |
Start bp | 1589649 |
End bp | 1592090 |
Gene Length | 2442 bp |
Protein Length | 813 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640556470 |
Product | conjugal transfer ATPase TrbE |
Protein accession | YP_001237628 |
Protein GI | 148253043 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.373275 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 0.784639 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGAATC TCGCCGAATA CCGCCGATCC AATACCCGGC TCGCTGACTT CCTGCCGTGG GCCGCTCTTG TCGATGAAGG AATCGTCCTG AACAAGGATG GGTCGTTTCA GCGCACGGCG AGATTTCGGG GACCGGACCT CGATAGTGCG GTGCCGGCCG AGCTCGTTGC TGTCGCCGGC CGTCTCAACA ATGCGCTGCG GCGCCTGGAA TCAGGCTGGG CGATCTTTGT CGAGGCGCAA CGCCATTCCA CTGGCAGCTA TCCCCCGAAT ACATTTCCCG ATGCGGCTTC CGCCCTCGTC GATGCAGAGC GGCGAGCACA ATTCGAGGAG GCCGGCGCCC ACTACGAGTC GAGCTATTTC CTCACGTTTC TCTATCTGCC GCCGCCAGAA GGAACGGCGA AAACGGAACG GCTGCTCTAC GAAGGGAGCA ACCGCACCGT CGATGCCGAT GGGCGCGAAA TCCTCCGTGG GTTCGTGGAT CGGACTAATC GTGTTCTGCA GCTGGTGGAA GGCTTCATGC CGGAGTGCGC CTGGCTTGAT GACGAGGAGA CGCTCACCTA CCTGCATTCG ACGATCTCGA CCAAGCGACA TCGGGTCAGG GTGCCCGAGA TCCCCATGTA TCTCGACGCG CTGCTCGCCG ATCAGCCGCT AACCGGTGGT CTTGAGCCGA TGCTCGGGTC GGCGCATCTG CGCATCCTGA CGGTGGTCGG GTTTCCGACG GCGACCACGC CCGGAATTCT CGACGACCTG AACCGGCTTC CGTTCACCTA TCGCTGGTCG ACCCGCGCGA TCATGCTCGA CAAGGCCGAT GCAACAAAGC TCCTGACCAG GATCAGGCGG CAATGGTTCG CCAAACGGAA GTCGGTGGCC GCGATCCTCA AGGAGATCAT GACCAACGAG GCTTCTGCTC TTCTCGATAC CGATGCCCAC AACAAGGCAA TGGATGCAGA CGCGGCGCTG CAGGAATTGG GCTCCGACCA GATTGGAGAA GCTTTCGTTA CGGCGACGAT CTCAGTCTGG GATGGCGAGC CCGCGAGCGC CGACGAGAAG CTCCGCCTGG TCGAAAAGGT GATCCAGGGA CGCGATTTCA CCTGCATGAT CGAGACGGTC AATGCTGTCG AGGCCTGGCT TGGCAGCGTC CCGGGCCATG TCTACGCCAA CGTCCGTCAG CCCCCGATCT CGACTTTGAA CTTGGCGCAC ATGATCCCGC TGTCCGCGGT GTGGGCCGGC GAGCCCAGGG ACCATCATTT TAAGGCTCCG CCTTTATTCT TGGCCAAAAC GGAAGGATCG ACCCCGTTTC GATTTTCACT CCACGTTGGT GACGTCGGGC ATACGCTGGT GGTCGGGCCG ACAGGAGCGG GTAAGTCGGT GCTGCTGGCG CTGATGGCGC TGCAGTTTCG GAGGTATCCG GAATCGCAGA TTTTTGCGTT CGATTTTGGG GGATCCATCC GTGCTGCCGC GATCGCCATG GGCGGCGACT GGCATGACCT CGGTGGAGCT GTCACTGGGG AGACTTCTGA GTCCGTCTTT CTTCAGCCTC TTGCCGGTAT CGATGATATC GGCGAGCGCG CCTGGGCGAC GGACTGGATC GGTTCAATCC TAAGCCGTGA ACGCATTGAG GTCACCCCCG AAGCCAAGGA GCATATCTGG TCGGCTTTGA GCTCGTTAGC CTCCGCGCCG GTCGAAGAAC GCACGCTTAC TGGTTTCTCC GTTCTGCTGC AATCGAACGT TCTGAAGCGG TCCCTGCAGC CCTATTGCAT CGGCGGCCCT TATGATCGTC TGCTCGATGC CGAAAATGAA CGGTTGGGAG CGTCATCCGT CCAGGTCTTC GAGACGGATG GCTTGATTGG TACCGCTGTT GCGCCCGCAG TTCTGGCTTA TCTGTTTCAC CGGATCGAGA GCCGCTTTGA TGGTCGGCCG ACCCTGCTCA TCATCGACGA AGGGTGGCTC GCCCTCGACG ACGCGGACTT TGCCGGACGG CTGCGCGAGT GGCTGAAGAC GCTGCGCAAG AAGAATGCCT CGGTCATCTT CGCCACCCAA TCGTTAGCGG ATATCGACGG CTCAGCGATC GCGCCGGCTA TTATCGAGAG CTGTCCGACA CGGATCTTGC TCCCGAACGA CCGCGCCATC GAGCCACAGA TCATGGCGAT CTATCGGCGC TTTGGGCTGA ACGACCGGCA GATCGAGATC CTGGCTCGCG CCATACCCAA GCGCGACTAC TACTGCCAGT CGCGTCGCGG CAATCGTCTG TTCGAACTTG GTCTAGGCGA GGTTGCGCTT GCCTTCACCG CGGCTTCTTC AAAGGCCGAT CAGGCGCTGA TCGAACAAGT CCTTGCCGAA CACGGCCGCG ATGGTTTTGC GTCCGGATGG TTGAAGGCAC GCGATATTGC CTGGGCGACC GACCTCATCC CTCATCTTGC TCAATTGGAG GCGTCCAAAT GA
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Protein sequence | MMNLAEYRRS NTRLADFLPW AALVDEGIVL NKDGSFQRTA RFRGPDLDSA VPAELVAVAG RLNNALRRLE SGWAIFVEAQ RHSTGSYPPN TFPDAASALV DAERRAQFEE AGAHYESSYF LTFLYLPPPE GTAKTERLLY EGSNRTVDAD GREILRGFVD RTNRVLQLVE GFMPECAWLD DEETLTYLHS TISTKRHRVR VPEIPMYLDA LLADQPLTGG LEPMLGSAHL RILTVVGFPT ATTPGILDDL NRLPFTYRWS TRAIMLDKAD ATKLLTRIRR QWFAKRKSVA AILKEIMTNE ASALLDTDAH NKAMDADAAL QELGSDQIGE AFVTATISVW DGEPASADEK LRLVEKVIQG RDFTCMIETV NAVEAWLGSV PGHVYANVRQ PPISTLNLAH MIPLSAVWAG EPRDHHFKAP PLFLAKTEGS TPFRFSLHVG DVGHTLVVGP TGAGKSVLLA LMALQFRRYP ESQIFAFDFG GSIRAAAIAM GGDWHDLGGA VTGETSESVF LQPLAGIDDI GERAWATDWI GSILSRERIE VTPEAKEHIW SALSSLASAP VEERTLTGFS VLLQSNVLKR SLQPYCIGGP YDRLLDAENE RLGASSVQVF ETDGLIGTAV APAVLAYLFH RIESRFDGRP TLLIIDEGWL ALDDADFAGR LREWLKTLRK KNASVIFATQ SLADIDGSAI APAIIESCPT RILLPNDRAI EPQIMAIYRR FGLNDRQIEI LARAIPKRDY YCQSRRGNRL FELGLGEVAL AFTAASSKAD QALIEQVLAE HGRDGFASGW LKARDIAWAT DLIPHLAQLE ASK
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