Gene BBta_1503 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBBta_1503 
SymboltrbE 
ID5151852 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBradyrhizobium sp. BTAi1 
KingdomBacteria 
Replicon accessionNC_009485 
Strand
Start bp1589649 
End bp1592090 
Gene Length2442 bp 
Protein Length813 aa 
Translation table11 
GC content60% 
IMG OID640556470 
Productconjugal transfer ATPase TrbE 
Protein accessionYP_001237628 
Protein GI148253043 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3451] Type IV secretory pathway, VirB4 components 
TIGRFAM ID[TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.373275 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.784639 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGAATC TCGCCGAATA CCGCCGATCC AATACCCGGC TCGCTGACTT CCTGCCGTGG 
GCCGCTCTTG TCGATGAAGG AATCGTCCTG AACAAGGATG GGTCGTTTCA GCGCACGGCG
AGATTTCGGG GACCGGACCT CGATAGTGCG GTGCCGGCCG AGCTCGTTGC TGTCGCCGGC
CGTCTCAACA ATGCGCTGCG GCGCCTGGAA TCAGGCTGGG CGATCTTTGT CGAGGCGCAA
CGCCATTCCA CTGGCAGCTA TCCCCCGAAT ACATTTCCCG ATGCGGCTTC CGCCCTCGTC
GATGCAGAGC GGCGAGCACA ATTCGAGGAG GCCGGCGCCC ACTACGAGTC GAGCTATTTC
CTCACGTTTC TCTATCTGCC GCCGCCAGAA GGAACGGCGA AAACGGAACG GCTGCTCTAC
GAAGGGAGCA ACCGCACCGT CGATGCCGAT GGGCGCGAAA TCCTCCGTGG GTTCGTGGAT
CGGACTAATC GTGTTCTGCA GCTGGTGGAA GGCTTCATGC CGGAGTGCGC CTGGCTTGAT
GACGAGGAGA CGCTCACCTA CCTGCATTCG ACGATCTCGA CCAAGCGACA TCGGGTCAGG
GTGCCCGAGA TCCCCATGTA TCTCGACGCG CTGCTCGCCG ATCAGCCGCT AACCGGTGGT
CTTGAGCCGA TGCTCGGGTC GGCGCATCTG CGCATCCTGA CGGTGGTCGG GTTTCCGACG
GCGACCACGC CCGGAATTCT CGACGACCTG AACCGGCTTC CGTTCACCTA TCGCTGGTCG
ACCCGCGCGA TCATGCTCGA CAAGGCCGAT GCAACAAAGC TCCTGACCAG GATCAGGCGG
CAATGGTTCG CCAAACGGAA GTCGGTGGCC GCGATCCTCA AGGAGATCAT GACCAACGAG
GCTTCTGCTC TTCTCGATAC CGATGCCCAC AACAAGGCAA TGGATGCAGA CGCGGCGCTG
CAGGAATTGG GCTCCGACCA GATTGGAGAA GCTTTCGTTA CGGCGACGAT CTCAGTCTGG
GATGGCGAGC CCGCGAGCGC CGACGAGAAG CTCCGCCTGG TCGAAAAGGT GATCCAGGGA
CGCGATTTCA CCTGCATGAT CGAGACGGTC AATGCTGTCG AGGCCTGGCT TGGCAGCGTC
CCGGGCCATG TCTACGCCAA CGTCCGTCAG CCCCCGATCT CGACTTTGAA CTTGGCGCAC
ATGATCCCGC TGTCCGCGGT GTGGGCCGGC GAGCCCAGGG ACCATCATTT TAAGGCTCCG
CCTTTATTCT TGGCCAAAAC GGAAGGATCG ACCCCGTTTC GATTTTCACT CCACGTTGGT
GACGTCGGGC ATACGCTGGT GGTCGGGCCG ACAGGAGCGG GTAAGTCGGT GCTGCTGGCG
CTGATGGCGC TGCAGTTTCG GAGGTATCCG GAATCGCAGA TTTTTGCGTT CGATTTTGGG
GGATCCATCC GTGCTGCCGC GATCGCCATG GGCGGCGACT GGCATGACCT CGGTGGAGCT
GTCACTGGGG AGACTTCTGA GTCCGTCTTT CTTCAGCCTC TTGCCGGTAT CGATGATATC
GGCGAGCGCG CCTGGGCGAC GGACTGGATC GGTTCAATCC TAAGCCGTGA ACGCATTGAG
GTCACCCCCG AAGCCAAGGA GCATATCTGG TCGGCTTTGA GCTCGTTAGC CTCCGCGCCG
GTCGAAGAAC GCACGCTTAC TGGTTTCTCC GTTCTGCTGC AATCGAACGT TCTGAAGCGG
TCCCTGCAGC CCTATTGCAT CGGCGGCCCT TATGATCGTC TGCTCGATGC CGAAAATGAA
CGGTTGGGAG CGTCATCCGT CCAGGTCTTC GAGACGGATG GCTTGATTGG TACCGCTGTT
GCGCCCGCAG TTCTGGCTTA TCTGTTTCAC CGGATCGAGA GCCGCTTTGA TGGTCGGCCG
ACCCTGCTCA TCATCGACGA AGGGTGGCTC GCCCTCGACG ACGCGGACTT TGCCGGACGG
CTGCGCGAGT GGCTGAAGAC GCTGCGCAAG AAGAATGCCT CGGTCATCTT CGCCACCCAA
TCGTTAGCGG ATATCGACGG CTCAGCGATC GCGCCGGCTA TTATCGAGAG CTGTCCGACA
CGGATCTTGC TCCCGAACGA CCGCGCCATC GAGCCACAGA TCATGGCGAT CTATCGGCGC
TTTGGGCTGA ACGACCGGCA GATCGAGATC CTGGCTCGCG CCATACCCAA GCGCGACTAC
TACTGCCAGT CGCGTCGCGG CAATCGTCTG TTCGAACTTG GTCTAGGCGA GGTTGCGCTT
GCCTTCACCG CGGCTTCTTC AAAGGCCGAT CAGGCGCTGA TCGAACAAGT CCTTGCCGAA
CACGGCCGCG ATGGTTTTGC GTCCGGATGG TTGAAGGCAC GCGATATTGC CTGGGCGACC
GACCTCATCC CTCATCTTGC TCAATTGGAG GCGTCCAAAT GA
 
Protein sequence
MMNLAEYRRS NTRLADFLPW AALVDEGIVL NKDGSFQRTA RFRGPDLDSA VPAELVAVAG 
RLNNALRRLE SGWAIFVEAQ RHSTGSYPPN TFPDAASALV DAERRAQFEE AGAHYESSYF
LTFLYLPPPE GTAKTERLLY EGSNRTVDAD GREILRGFVD RTNRVLQLVE GFMPECAWLD
DEETLTYLHS TISTKRHRVR VPEIPMYLDA LLADQPLTGG LEPMLGSAHL RILTVVGFPT
ATTPGILDDL NRLPFTYRWS TRAIMLDKAD ATKLLTRIRR QWFAKRKSVA AILKEIMTNE
ASALLDTDAH NKAMDADAAL QELGSDQIGE AFVTATISVW DGEPASADEK LRLVEKVIQG
RDFTCMIETV NAVEAWLGSV PGHVYANVRQ PPISTLNLAH MIPLSAVWAG EPRDHHFKAP
PLFLAKTEGS TPFRFSLHVG DVGHTLVVGP TGAGKSVLLA LMALQFRRYP ESQIFAFDFG
GSIRAAAIAM GGDWHDLGGA VTGETSESVF LQPLAGIDDI GERAWATDWI GSILSRERIE
VTPEAKEHIW SALSSLASAP VEERTLTGFS VLLQSNVLKR SLQPYCIGGP YDRLLDAENE
RLGASSVQVF ETDGLIGTAV APAVLAYLFH RIESRFDGRP TLLIIDEGWL ALDDADFAGR
LREWLKTLRK KNASVIFATQ SLADIDGSAI APAIIESCPT RILLPNDRAI EPQIMAIYRR
FGLNDRQIEI LARAIPKRDY YCQSRRGNRL FELGLGEVAL AFTAASSKAD QALIEQVLAE
HGRDGFASGW LKARDIAWAT DLIPHLAQLE ASK