Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BBta_1493 |
Symbol | |
ID | 5152001 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bradyrhizobium sp. BTAi1 |
Kingdom | Bacteria |
Replicon accession | NC_009485 |
Strand | + |
Start bp | 1581317 |
End bp | 1583419 |
Gene Length | 2103 bp |
Protein Length | 700 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640556460 |
Product | conjugal transfer coupling protein TraG |
Protein accession | YP_001237618 |
Protein GI | 148253033 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00200644 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.246461 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAGTCTC GGACGCAAGC GGGACCTCGC GGTCTGACCA TCCGGTTTCT ACGCCACGGC GCGCGTGATC ACGACAGCGA CTGGATCGCT GTTGAATGTC AGCCGGACTT GCGCATCCCT CTGTGCATGT CCGCAACCAA AATCCTCTGG GGCCAGCTTT TCTTTGCGTC GCTGCTCGTG CTTGCCTTTC TCTGGACAGC CACCGAGTGG ACCGCTTGGC GGCTCGGCTT TCAGCCGCAA CTCGGGCCGG CCTGGTTCAT GATCGGGCCC TGGCCCATGT ATCAACCATT GGCCCTCTTC ATCTGGTGGT TCAAATTCGA CGCTTATGCG CCAACGATTT TCCTTCAGGG TGGGTGCATC GCCGCAAGCG GCGGGATCGC AGCCATGGCC GTTACCATGA TCCTCTCGGT CTGGCGTGCA AAGGAAGCTC AGCACGTTAC GACTTATGGT TCGGCGCAGT GGGCCGATGC GCGGGAGGTG CGCCGTGCCG GCCTTCTTGG GCCCGATGGC GTCGTGCTCG GTCGTCTGGG CGATCGCTAC CTGCGGCACA ACGGTCCCGA ACACGTGCTG TGTTTTGCGC CGACGAGGTC GGGAAAGGGC GTTGGTCTCG TCATCCCGAC CCTTCTGACG TGGCCGTATT CCACTGTTGT CCACGACATC AAGGGCGAAA ACCTCCAATT GACCTCCGGC TTTCGAGCCC AGCTCGGGTC GGTGCTACTG TTTGATCCGA CTAATCCCGC GAGCGCTGCT TACAATCCAT TGCTCGAGAT CCGTAAAGGA GACAATGAGG TACGCGACGC GCAGAATATC GCCGACATTC TCGTTGACCC CGAAGGAGCG CTCGAGCGGC GCAATCATTG GGAGAAAACC AGCCATTCTC TGCTGGTCGG TGCCATCCTG CACGTCCTCT ACGCCGAGGC CGACAAGACG CTGGCGGGGG TCGCCAACTT CCTGTCGGAT CCGTTACGCC CAATCGAAGC AACCCTGAAC GCCATGTTGG CGACACCGCA CCTCGGCGAG CGCGTCCATC CGGTGGTGGC CTCGGCGGCA CGCGAGCTCC TCAACAAGAG TGAGAACGAG CGATCGGGCG TGTTGTCGAC GACCATGAGC TTCCTGGGAC TTTACCGCGA CCCTGTGGTT GCCAAGGTGA CGGGCCGAAG CGACTGGCGC ATCCGTGATC TGGTTGATGG GGATCAACCG ATATCTCTGT ATCTTGTGAT ACCACCCTCC GACATCGCCC GCACAAAGCC GCTGATGCGC CTCATCCTCA ATCAGATTGG ACGGCGGCTG ACCGAAAGCT TGGATACCGA CCGACGGCGG CAAAAGCTGC TCCTGATGCT CGATGAGTTC GCAGCCCTCG GCCGGCTAGA CTTTTTTGAA AGTCAGCTAA CCTTCATGGC AGGTTACGGG ATCCGAAGCT TCCTGATCAC CCAGAGCTTA AATCAGCTTG AACGCGCCTA TGGCCCGAAC CACGCGATTC TGGACAATTG CCACATCCGG ATCGCGTTCT CCACCAATGA CGAGCGCACC GCCAAGCGCG TATCGGACGC GCTCGGGACC GCAACCGAGA TGCGCGCGAT GAAGAACTAT GCCGGTCATC GCCTCTCGCC GTGGCTCGGC CATTTGATGG TGAGCCGCCA GGAGACGTCG CGTCCGTTGC TAACGCCTGG AGAGATTATG CAACTCTCCC CCAACGAGGC AATTGTGATG GTCTCCGGGC TGCATCCGAT CCGCGCCACC AAGGTCCGCT ACTATGAAGA TCCTCAATTC CAACGCCGGA TCTTGAAGCC ATCGGACGCG ATGCCGATCG ACCGGGCCGC GCGATCGGAC GAGTGGTCAG GACGTGGGCC AATTCCTCCA TCGGTCAAAT TGCTGACCGC TCTCAAGAAC AAGGCGCGCG ATCAGAATGG CGGCATTCGC CGCGAACCGG AGCTGCCGCA GCAAGAAGAG GTCATCGTGA AGGCGCCACT CGCCGAGAAC GAGTTTGATG CTGCGCCCGA TGAGGGTGAC GCTGAAGCCG TGCAGGCATC AGCGTTAAAT CGATCAATGC AGGGCCTGGC ACGCGCTGTC AGCCTCGATC CTGACGACAA GATGGGCCTG TAA
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Protein sequence | MESRTQAGPR GLTIRFLRHG ARDHDSDWIA VECQPDLRIP LCMSATKILW GQLFFASLLV LAFLWTATEW TAWRLGFQPQ LGPAWFMIGP WPMYQPLALF IWWFKFDAYA PTIFLQGGCI AASGGIAAMA VTMILSVWRA KEAQHVTTYG SAQWADAREV RRAGLLGPDG VVLGRLGDRY LRHNGPEHVL CFAPTRSGKG VGLVIPTLLT WPYSTVVHDI KGENLQLTSG FRAQLGSVLL FDPTNPASAA YNPLLEIRKG DNEVRDAQNI ADILVDPEGA LERRNHWEKT SHSLLVGAIL HVLYAEADKT LAGVANFLSD PLRPIEATLN AMLATPHLGE RVHPVVASAA RELLNKSENE RSGVLSTTMS FLGLYRDPVV AKVTGRSDWR IRDLVDGDQP ISLYLVIPPS DIARTKPLMR LILNQIGRRL TESLDTDRRR QKLLLMLDEF AALGRLDFFE SQLTFMAGYG IRSFLITQSL NQLERAYGPN HAILDNCHIR IAFSTNDERT AKRVSDALGT ATEMRAMKNY AGHRLSPWLG HLMVSRQETS RPLLTPGEIM QLSPNEAIVM VSGLHPIRAT KVRYYEDPQF QRRILKPSDA MPIDRAARSD EWSGRGPIPP SVKLLTALKN KARDQNGGIR REPELPQQEE VIVKAPLAEN EFDAAPDEGD AEAVQASALN RSMQGLARAV SLDPDDKMGL
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