| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_1493 |
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| Symbol | |
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| ID | 5152001 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | + |
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| Start bp | 1581317 |
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| End bp | 1583419 |
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| Gene Length | 2103 bp |
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| Protein Length | 700 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640556460 |
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| Product | conjugal transfer coupling protein TraG |
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| Protein accession | YP_001237618 |
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| Protein GI | 148253033 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00200644 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.246461 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGTCTC GGACGCAAGC GGGACCTCGC GGTCTGACCA TCCGGTTTCT ACGCCACGGC
GCGCGTGATC ACGACAGCGA CTGGATCGCT GTTGAATGTC AGCCGGACTT GCGCATCCCT
CTGTGCATGT CCGCAACCAA AATCCTCTGG GGCCAGCTTT TCTTTGCGTC GCTGCTCGTG
CTTGCCTTTC TCTGGACAGC CACCGAGTGG ACCGCTTGGC GGCTCGGCTT TCAGCCGCAA
CTCGGGCCGG CCTGGTTCAT GATCGGGCCC TGGCCCATGT ATCAACCATT GGCCCTCTTC
ATCTGGTGGT TCAAATTCGA CGCTTATGCG CCAACGATTT TCCTTCAGGG TGGGTGCATC
GCCGCAAGCG GCGGGATCGC AGCCATGGCC GTTACCATGA TCCTCTCGGT CTGGCGTGCA
AAGGAAGCTC AGCACGTTAC GACTTATGGT TCGGCGCAGT GGGCCGATGC GCGGGAGGTG
CGCCGTGCCG GCCTTCTTGG GCCCGATGGC GTCGTGCTCG GTCGTCTGGG CGATCGCTAC
CTGCGGCACA ACGGTCCCGA ACACGTGCTG TGTTTTGCGC CGACGAGGTC GGGAAAGGGC
GTTGGTCTCG TCATCCCGAC CCTTCTGACG TGGCCGTATT CCACTGTTGT CCACGACATC
AAGGGCGAAA ACCTCCAATT GACCTCCGGC TTTCGAGCCC AGCTCGGGTC GGTGCTACTG
TTTGATCCGA CTAATCCCGC GAGCGCTGCT TACAATCCAT TGCTCGAGAT CCGTAAAGGA
GACAATGAGG TACGCGACGC GCAGAATATC GCCGACATTC TCGTTGACCC CGAAGGAGCG
CTCGAGCGGC GCAATCATTG GGAGAAAACC AGCCATTCTC TGCTGGTCGG TGCCATCCTG
CACGTCCTCT ACGCCGAGGC CGACAAGACG CTGGCGGGGG TCGCCAACTT CCTGTCGGAT
CCGTTACGCC CAATCGAAGC AACCCTGAAC GCCATGTTGG CGACACCGCA CCTCGGCGAG
CGCGTCCATC CGGTGGTGGC CTCGGCGGCA CGCGAGCTCC TCAACAAGAG TGAGAACGAG
CGATCGGGCG TGTTGTCGAC GACCATGAGC TTCCTGGGAC TTTACCGCGA CCCTGTGGTT
GCCAAGGTGA CGGGCCGAAG CGACTGGCGC ATCCGTGATC TGGTTGATGG GGATCAACCG
ATATCTCTGT ATCTTGTGAT ACCACCCTCC GACATCGCCC GCACAAAGCC GCTGATGCGC
CTCATCCTCA ATCAGATTGG ACGGCGGCTG ACCGAAAGCT TGGATACCGA CCGACGGCGG
CAAAAGCTGC TCCTGATGCT CGATGAGTTC GCAGCCCTCG GCCGGCTAGA CTTTTTTGAA
AGTCAGCTAA CCTTCATGGC AGGTTACGGG ATCCGAAGCT TCCTGATCAC CCAGAGCTTA
AATCAGCTTG AACGCGCCTA TGGCCCGAAC CACGCGATTC TGGACAATTG CCACATCCGG
ATCGCGTTCT CCACCAATGA CGAGCGCACC GCCAAGCGCG TATCGGACGC GCTCGGGACC
GCAACCGAGA TGCGCGCGAT GAAGAACTAT GCCGGTCATC GCCTCTCGCC GTGGCTCGGC
CATTTGATGG TGAGCCGCCA GGAGACGTCG CGTCCGTTGC TAACGCCTGG AGAGATTATG
CAACTCTCCC CCAACGAGGC AATTGTGATG GTCTCCGGGC TGCATCCGAT CCGCGCCACC
AAGGTCCGCT ACTATGAAGA TCCTCAATTC CAACGCCGGA TCTTGAAGCC ATCGGACGCG
ATGCCGATCG ACCGGGCCGC GCGATCGGAC GAGTGGTCAG GACGTGGGCC AATTCCTCCA
TCGGTCAAAT TGCTGACCGC TCTCAAGAAC AAGGCGCGCG ATCAGAATGG CGGCATTCGC
CGCGAACCGG AGCTGCCGCA GCAAGAAGAG GTCATCGTGA AGGCGCCACT CGCCGAGAAC
GAGTTTGATG CTGCGCCCGA TGAGGGTGAC GCTGAAGCCG TGCAGGCATC AGCGTTAAAT
CGATCAATGC AGGGCCTGGC ACGCGCTGTC AGCCTCGATC CTGACGACAA GATGGGCCTG
TAA
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| Protein sequence | MESRTQAGPR GLTIRFLRHG ARDHDSDWIA VECQPDLRIP LCMSATKILW GQLFFASLLV
LAFLWTATEW TAWRLGFQPQ LGPAWFMIGP WPMYQPLALF IWWFKFDAYA PTIFLQGGCI
AASGGIAAMA VTMILSVWRA KEAQHVTTYG SAQWADAREV RRAGLLGPDG VVLGRLGDRY
LRHNGPEHVL CFAPTRSGKG VGLVIPTLLT WPYSTVVHDI KGENLQLTSG FRAQLGSVLL
FDPTNPASAA YNPLLEIRKG DNEVRDAQNI ADILVDPEGA LERRNHWEKT SHSLLVGAIL
HVLYAEADKT LAGVANFLSD PLRPIEATLN AMLATPHLGE RVHPVVASAA RELLNKSENE
RSGVLSTTMS FLGLYRDPVV AKVTGRSDWR IRDLVDGDQP ISLYLVIPPS DIARTKPLMR
LILNQIGRRL TESLDTDRRR QKLLLMLDEF AALGRLDFFE SQLTFMAGYG IRSFLITQSL
NQLERAYGPN HAILDNCHIR IAFSTNDERT AKRVSDALGT ATEMRAMKNY AGHRLSPWLG
HLMVSRQETS RPLLTPGEIM QLSPNEAIVM VSGLHPIRAT KVRYYEDPQF QRRILKPSDA
MPIDRAARSD EWSGRGPIPP SVKLLTALKN KARDQNGGIR REPELPQQEE VIVKAPLAEN
EFDAAPDEGD AEAVQASALN RSMQGLARAV SLDPDDKMGL
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