| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_1362 |
|---|
| Symbol | kpsF |
|---|
| ID | 5156300 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 1447963 |
|---|
| End bp | 1448964 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640556343 |
|---|
| Product | arabinose 5-phosphate isomerase |
|---|
| Protein accession | YP_001237502 |
|---|
| Protein GI | 148252917 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0794] Predicted sugar phosphate isomerase involved in capsule formation
[COG2905] Predicted signal-transduction protein containing cAMP-binding and CBS domains |
|---|
| TIGRFAM ID | [TIGR00393] KpsF/GutQ family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.385255 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.0702904 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGAGAT CGAAGCCGTT GACCGAAGCC CCTCCCGCCA ATGCGGACAT TCAATCGGCG
CTGCGGACGC TCGACGCCGG CAGCAACGGC ATTGCCGCGA TCTCTGCGGC ATTGCATGGA
CCGCTGGGCG CGGCCTTCGC CGCCGCCGTC GCGCTGATTC GGCAAGCCAA GGGCCGTGCG
ATCCTGACCG GGCTCGGCAA GTCGGGCCAC GTCGCCCGCA AGATGGCCGC GACCCTGGCC
TCGACCGGTA CGCCGGCCTT CTTCGTCCAT TCCGCCGAGG CCGGCCATGG CGATCTCGGC
ATGATCACCT CGGATGACGT CGTCATCGCG CTGTCCTGGT CCGGCGAGCA GCCGGAGATG
AAGACCTTGG TCAACTACAC CAAGCGCTTT GCGATCCCGA TGATCGCCAT CACCTCGAAC
GCGCAATCCT CGCTCGGGCA GGCGGCGCGC ATCGTGCTGG AGCTGCCGAA GGCGCGCGAG
GCCTGTCCGC ACAATCTGGC GCCGACCACC TCGACCCTGA TGCAGGCCGC GATCGGCGAC
GCGCTGGCGA TCGCGCTGCT CGAAGGCCGC GGCTTCACCG CGCTGGAATT CGCCAATTTC
CATCCGGGCG GCAAGCTCGG CGCCATGCTC AAGCACATCT CCGACCTGAT GCGCTCGGGG
GACGCGGTGC CGCTGAAGCC GCTCGGCACC GGCATGGCCG ATGCGCTGGC CGAGATGTCA
GCCAAGGGAC TCGGCTGCGT CGTCATCGTC GACGGCCGCG GCCATGTTGC CGGCATCATC
ACCGACGGCG ATCTCCGCCG GAAGATGCGC GCGGATCTGC TGTCGGTCAC GGTCGACGAG
ATCATGACCG CGAACCCGCG CACCGTCGGC CGCGAGGCGC TCGCCTCCGA GGCGCTGGAG
ATCCTGAACT CCGCCAAGAT CACCACCCTG ATCGTCACCG ACGGCGCGAA ACCGGTCGGC
ATCCTGCACA TGCATGATCT GCTGCGGGCC GGAGTGGCGT GA
|
|---|
| Protein sequence | MPRSKPLTEA PPANADIQSA LRTLDAGSNG IAAISAALHG PLGAAFAAAV ALIRQAKGRA
ILTGLGKSGH VARKMAATLA STGTPAFFVH SAEAGHGDLG MITSDDVVIA LSWSGEQPEM
KTLVNYTKRF AIPMIAITSN AQSSLGQAAR IVLELPKARE ACPHNLAPTT STLMQAAIGD
ALAIALLEGR GFTALEFANF HPGGKLGAML KHISDLMRSG DAVPLKPLGT GMADALAEMS
AKGLGCVVIV DGRGHVAGII TDGDLRRKMR ADLLSVTVDE IMTANPRTVG REALASEALE
ILNSAKITTL IVTDGAKPVG ILHMHDLLRA GVA
|
|---|
| |