| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_1127 |
|---|
| Symbol | |
|---|
| ID | 5153181 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | - |
|---|
| Start bp | 1201026 |
|---|
| End bp | 1202978 |
|---|
| Gene Length | 1953 bp |
|---|
| Protein Length | 650 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640556115 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_001237282 |
|---|
| Protein GI | 148252697 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.127949 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGACCG CACCCAGCGA CCCCAAGGCG GCAGCGCTGG CGAAAGCCCA GGCCGCGAGC
TCGCTGCAGA ACATCTTCCT GACCCTGCTG TCGAACGTGG CGATCGCGAC CTCGCTGGCG
CTGCTGTTCT ATTTCCGTGA AGGCAACACA CTGATCTTCT GGTGGCTCGG CGCCGCGATC
GCCTTCGCCG TGCTGCGCGC CGGATGGGTC TCGCGGCTCA AATCCTCGGG CCGCATCGCG
CAGGATCCGC AGCCCGTGCT GCGCAGCCTG ACCGTGATGG CCCTTGCCAG CGGCCTGCTC
TGGTCAGTGG TGCCGCTCGC TTTGCCGCTG TTCTCGCACG CACAGAACGT CAACGACGTC
GTCTTCATCA TGGCCGGCAC CACCACCGGC GCGATCATCC AGAGCCTCGC CTATTCGCCG
ATGGCGATCG CCTTCAGCGC CCCGGTGATG GCTGCGACCA TTCTGCGCAT GCTGCTCTCC
GGCAGCGACG TCGGCTACAT CGTCGCGGCC GACGTGGTCT TCCTGACCGT CATGCTGTTC
CGCGCGGCGC TGCTCGGCGA ACGCAATTTC ACCACCAGCC AGAACACCGC GTTCGAGGCC
ACCGCGCTGG CGGCCTCGCT CGCTGACGCC AACCAGGCCT TGGAGCGGCT GGTGCGGATG
GACTCGTTGA CCGGGCTGGC CAATCGCAGC CACTTCCGCA GTGTGGCCGG CGCGGCCTGC
GCGGCCGGAA CCGGGGTCGC GTTCCTGCTG TTCGACGTCG ACAACTTCAA GACCATCAAC
GACACCCGCG GCCACGATGC CGGCGACCGG GTGCTGCAGA CATTGGCTGC GCTGCTGTGC
TCGGCCTGCG GCGCCGATGA TCTGCCGGTG CGATTGGGCG GCGACGAGTT CATCGTGGTG
CTGCAGGGTG CGAACGCGGA CCGTCGCGCA GTGGCGCTGG GCGAACGACT GATGAGCGCG
CTGCTGCGCC CGGTCCTGAT TGCGGGCCAG CCCTTGACGG TCAGCTGCTC GATCGGCATC
GCGGCCCATG CCGCCGGCGC CATCGATCTG GAGGAACTGT CGGCCAGGGC CGACGCCGCG
CTCTATCGCG CCAAGGAGGA TGGGCGGGCC TGCATGCGGG TGTTCGACGC GCAGATGCAG
TCCGCTTTGA CATTGCAGCG CCGCCTTGAC TTTGAGCTCG CCGCCGCGCT GGCGCGGCGC
GAATTGCATG TCGAGTTTCA GCCGCAGGTC GCAATGGCCA CGCAGGAGAT CATCGGCTTC
GAGGCGCTGC TGCGCTGGAA CCACGCCTGC GCGGGACTGA TCCCGCCGCC CGACATCGTC
TCCGCGGCGA TCCGGTTGCG CCTGTCCGCG CAGCTCACGG AGTTCGTCGG CGAGCGGGTC
TGCGCCTTCC TGCGCGCGCT CGACCGCAAG AAGGCGCCGC AGATCAGGGT GTCGATCAAC
GTCTCGCCGC GCGAGTTCCC GATCCACTCG CCGGCCCAGA CCCTCAAGAC GGTGTCGGAG
CGCTACGGGG TCGATCCCAA GCGGATCGAG ATCGAGGTCA CCGAGGAGGC GATGTTCGAC
CCGAAGCGCT GCGCCGACGA GCTGAAGCTG ATCGATCAAT ACGGCTTTGC CCTCGCCATC
GACGATTTCG GCGTCGGCCA TTCCTCGATC GCCAACCTGA TGGCGGTCGA GATCGACACC
ATCAAGATCG ACCGCTCCTT CATCCACGGC ATCGCCGGCA ATCGCAGGGA TCAGCAGCTC
GTCGCCGCCA TCACCGCGGT GGCCCTGCCG CTCGGCCACC GCATCATCGC CGAGGGCGTC
GAGAGCGAGG CGGATGCGGA GTGCCTGCGC ATGCTCGGCT GCTCCTACGG CCAGGGCTGG
CTCTATGGCA AGCCGATGAA GGAGGACGAC GCGATCGGCT GGCTGGTGCA GCGTCGAGCC
GCTGCTATCG AGCCGCTGCC GCGCAGCGCT TAG
|
|---|
| Protein sequence | MPTAPSDPKA AALAKAQAAS SLQNIFLTLL SNVAIATSLA LLFYFREGNT LIFWWLGAAI
AFAVLRAGWV SRLKSSGRIA QDPQPVLRSL TVMALASGLL WSVVPLALPL FSHAQNVNDV
VFIMAGTTTG AIIQSLAYSP MAIAFSAPVM AATILRMLLS GSDVGYIVAA DVVFLTVMLF
RAALLGERNF TTSQNTAFEA TALAASLADA NQALERLVRM DSLTGLANRS HFRSVAGAAC
AAGTGVAFLL FDVDNFKTIN DTRGHDAGDR VLQTLAALLC SACGADDLPV RLGGDEFIVV
LQGANADRRA VALGERLMSA LLRPVLIAGQ PLTVSCSIGI AAHAAGAIDL EELSARADAA
LYRAKEDGRA CMRVFDAQMQ SALTLQRRLD FELAAALARR ELHVEFQPQV AMATQEIIGF
EALLRWNHAC AGLIPPPDIV SAAIRLRLSA QLTEFVGERV CAFLRALDRK KAPQIRVSIN
VSPREFPIHS PAQTLKTVSE RYGVDPKRIE IEVTEEAMFD PKRCADELKL IDQYGFALAI
DDFGVGHSSI ANLMAVEIDT IKIDRSFIHG IAGNRRDQQL VAAITAVALP LGHRIIAEGV
ESEADAECLR MLGCSYGQGW LYGKPMKEDD AIGWLVQRRA AAIEPLPRSA
|
|---|
| |