| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_0952 |
|---|
| Symbol | fadD |
|---|
| ID | 5151462 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | - |
|---|
| Start bp | 985166 |
|---|
| End bp | 986857 |
|---|
| Gene Length | 1692 bp |
|---|
| Protein Length | 563 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640555946 |
|---|
| Product | Long-chain-fatty-acid--CoA ligase |
|---|
| Protein accession | YP_001237114 |
|---|
| Protein GI | 148252529 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.412461 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGCGCA TCTGGCTCAA GCACTACCCG GCCGGCGTTC CCGCCGATAT CGATCCCAGC
AAATACCAGT CGCTGGTCGA ACTGCTGGAA GAGAGCTTCA AGACATTCGC CGACCGCCGC
GCCTTCATCT GCATGGACAA GGCGATCAGC TATCGCGAGC TCGACGACAT GTCGGTGGCA
ATGGGCGCCT ATCTGCAGGG GCTCGGACTT GCCAAGGGCG CGCGGGTCGC GCTGATGATG
CCCAACGTGC TGCAATATCC GATCGCGATC TCAGGCGTGC TGCGGGCCGG CTATGCCGTC
GTCAATGTCA ACCCGCTGTA TACGCCGCGC GAGCTCGAGC ATCAGCTCAA GGACTCCGGC
GCCGAGGCGA TCATCGTGCT GGAGAATTTC GCCCACACGG TGCAGCAGGT GGTCGGCCAG
ACAAAGGTCA AGCACATCAT CATCGCCAGC ATGGGCGACC TGCTCGGCTT CAAGGGCGTG
ATCGTCAATC TCGTCGTCCG CCGGCTGAAG AAGATGGTGC CGGCCTTTTC GCTGCCCGGC
GCGGTGCCGT TCAACGATGC GCTCGCCGCC GGCCGCAGCA AGCGGTTTCA GAAGCCCGTG
ATCGGTCCCG ACGACGTCGC CTTCCTGCAA TATACCGGCG GCACCACCGG CGTCTCGAAG
GGCGCCACAT TGCTTCACCG CAACGTGGTC GCCAACGTGC TGCAAAACGA CGCCTGGCTG
CAGCCGGTGA TGGAGCGGCC ACCGCATGTC GATCAGCTGC TGATCGTCTG CGCGCTGCCG
CTCTATCACA TCTTTGCGCT GACCTGCTGC TTCCTGCTCG CGGTGCGCGC CGGCGGCGCC
AATCTCCTGA TCCCCAATCC GCGCGACATT CCCAGCTTCA TCAAGGAGCT GATGAAGTAT
CAGGTCAACA ATTTCCCGGC CGTCAACACG CTCTATAACG GCCTGCTGCA TCACCCTGAC
TTCCGGAAGC TCGACTTCTC CAAGCTCAAG GTCTCCAATG GCGGCGGCAT GGCCGTGCAG
CGTCCGGTGG CCGAGCAGTG GAAGCAGGTG ACGGGCTGCA GCATCGCCGA AGGCTACGGC
CTGTCGGAGA CCGCGCCGGT CCTGACCTGC AACCTGCCGA CCTCGACCGA GTTCACCGGC
ACGATCGGCC TGCCGCTGCC CTCGACCTGG CTCTCGATCC GTGACGACGA CGGCAACGAG
GTGCCGCTGG GACAGGCCGG CGAGATCTGT GCGAAGGGTC CGCAGGTGAT GGCCGGCTAT
TGGAATCGTC CTGATGAAAC CGCCAAGGTG ATGACGGCGG ACGGCTTCTT CCGCACCGGC
GACATCGGTA TCATGGCCGC GGACGGCTCG ATCAAGATCG TCGATCGCAA GAAGGACATG
ATCCTGGTCT CCGGCTTCAA CGTCTATCCG AACGAGGTCG AGGAAGTGAT CGCGACCCAT
CCGGGCGTGC TCGAGACCGC GGTGATCGGC CTGCCCGACG AAAAGACTGG AGAGGTCGTC
AAGGCGTTCG TCGTCAAGAA GGACCCCGCC CTCACGGCCG AGGACATCGT CAAGCATTGC
CACGCGCAAT TGACGAACTA CAAGGTGCCG AAGCAGATCG AGTTCAGGAC GGAGCTGCCG
AAGACCAATG TCGGCAAGAT CCTGCGCCGC GAGCTGCGTG ACGAAAAGAA GAATCCGGCG
GCGGCGGCGT GA
|
|---|
| Protein sequence | MERIWLKHYP AGVPADIDPS KYQSLVELLE ESFKTFADRR AFICMDKAIS YRELDDMSVA
MGAYLQGLGL AKGARVALMM PNVLQYPIAI SGVLRAGYAV VNVNPLYTPR ELEHQLKDSG
AEAIIVLENF AHTVQQVVGQ TKVKHIIIAS MGDLLGFKGV IVNLVVRRLK KMVPAFSLPG
AVPFNDALAA GRSKRFQKPV IGPDDVAFLQ YTGGTTGVSK GATLLHRNVV ANVLQNDAWL
QPVMERPPHV DQLLIVCALP LYHIFALTCC FLLAVRAGGA NLLIPNPRDI PSFIKELMKY
QVNNFPAVNT LYNGLLHHPD FRKLDFSKLK VSNGGGMAVQ RPVAEQWKQV TGCSIAEGYG
LSETAPVLTC NLPTSTEFTG TIGLPLPSTW LSIRDDDGNE VPLGQAGEIC AKGPQVMAGY
WNRPDETAKV MTADGFFRTG DIGIMAADGS IKIVDRKKDM ILVSGFNVYP NEVEEVIATH
PGVLETAVIG LPDEKTGEVV KAFVVKKDPA LTAEDIVKHC HAQLTNYKVP KQIEFRTELP
KTNVGKILRR ELRDEKKNPA AAA
|
|---|
| |