Gene BBta_0771 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBBta_0771 
Symbol 
ID5153417 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBradyrhizobium sp. BTAi1 
KingdomBacteria 
Replicon accessionNC_009485 
Strand
Start bp795020 
End bp796477 
Gene Length1458 bp 
Protein Length485 aa 
Translation table11 
GC content67% 
IMG OID640555770 
Productputative cation-driven multidrug efflux pump 
Protein accessionYP_001236941 
Protein GI148252356 
COG category[V] Defense mechanisms 
COG ID[COG0534] Na+-driven multidrug efflux pump 
TIGRFAM ID[TIGR00797] putative efflux protein, MATE family 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.00132131 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGTCCGAAT ACAGCCTCGC CGAAAGTTCG GTCGAGCGGG CCACACCGAA GCAAGCGGAA 
CGACAGCCGC GCAGCGCGTT GTCTGACGGA CCGATCCTGC GGACACTGTT GTCGTTGGCA
TGGCCGAACA TCATTGCGAA CTCGGCCGGC ACCTGCGTCG TCATCGCTGA GACGTCCTAT
ATCGGCCGGC TCGGCATCGA GGCGCTCGCC GCGATGGCGC TGGTCTTCCC CTTGGTGATC
CTGACGATGA CCATGTCCGG CGGCGCCATG GGCGGTGGCG TCGCTTCGGC GATCGCGCGT
GCGCTCGGCG CCGGCGACAC CGAGCGGGCC TCGACGCTTG CGGCGCATGC GCTGCTGATC
GCGTTGTGCT TCGGTGCAAC CTTCATGGTC GGGATGCTGA TGTTCGGTCC CCGCCTGCTC
CAAGTGCTTG GCGGCCGCGG TGCGGTGCTC GAACATGCCG CGGCCTACCT GCAGGTGTTC
TTTGGTGGGG CCATCCTGCC GTGGCTGATG AACGCGATGG CGGGCATTCT GCGCGGCACT
GGCAATATGA AGCTGCCATC GTTCATGATC CTGAACGCGG CGGTGTTGCA GATCGTGCTG
GGTGGAACGC TGAGCCTGGG CCTCGGGCTC GGCATGCGCG GCGTCGCGGC CGGTGCGCTG
CTCGCGTTCA GCGCCAGCAT CTCGGTGATG GGCTGGTATC TGCTCTCGGG ACGCGCCCGT
GTGCGGCCGA AGCTGTACGG TCTCAAGATC AGCCGCGCGA TGTTTGCCGA TATCCTCAAG
GTCGGCGCGA TCGCCTGTTT CTCGCCGCTG CAATCGGTGC TGTCGATCGC GATCTTCACG
CATATGCTGG CGACGTTCGG CACGGCCGTG CTCGCCGGCT ACGGCATCGG CGCGCGCCTG
GAATTCATGA TGACAACCGT CGCGTTTTCG TTCGGCATGG CCTCGGTGCC GATGGTCGGC
ATGGCGGTCG GCGCCGAGCG GATCGCAAGG GCTCGCCGGA TTGCCTGGAC GGCGGCGCTC
GTCTCGTTCG TCACCGTGGG GGCGCTCTCG ACCGTGATCG CGATCTTTCC GCAATTGTGG
GTCGACATCT TCACGCAGGA CCCGAGCGCG CGGGCGGCGG GAGCGCATTA TCTGAGAATC
GCCGCGCCGA TGTATGCCTT CATCGGTCTC GCGATCGCGC TGTATTTCGC CTCTCAGGGG
GCGGCGAAGG TGATCGGCCC CGTGCTCGTG CAAACGGTGC GGCTGGTGTT CATCGCCGCG
GGCGGCAGCT ATCTGCTGGC GGGCGCGGCG ACTGAAACGG GGTTCTTCCT GCTGGCAGCC
TCCTCGATGG TGCTGCTCGG CGTGCTCACT CTCGCCAGCG TCATGCTGAC GCGTTGGGGG
CCGAAGCCGG TGGTCGCCGA ACTGCGCCCG GCCGTCGTGG CGGCCGAGCT GAAGGGCGTT
CCGCCGTCAT CGCGCTGA
 
Protein sequence
MSEYSLAESS VERATPKQAE RQPRSALSDG PILRTLLSLA WPNIIANSAG TCVVIAETSY 
IGRLGIEALA AMALVFPLVI LTMTMSGGAM GGGVASAIAR ALGAGDTERA STLAAHALLI
ALCFGATFMV GMLMFGPRLL QVLGGRGAVL EHAAAYLQVF FGGAILPWLM NAMAGILRGT
GNMKLPSFMI LNAAVLQIVL GGTLSLGLGL GMRGVAAGAL LAFSASISVM GWYLLSGRAR
VRPKLYGLKI SRAMFADILK VGAIACFSPL QSVLSIAIFT HMLATFGTAV LAGYGIGARL
EFMMTTVAFS FGMASVPMVG MAVGAERIAR ARRIAWTAAL VSFVTVGALS TVIAIFPQLW
VDIFTQDPSA RAAGAHYLRI AAPMYAFIGL AIALYFASQG AAKVIGPVLV QTVRLVFIAA
GGSYLLAGAA TETGFFLLAA SSMVLLGVLT LASVMLTRWG PKPVVAELRP AVVAAELKGV
PPSSR